BAC Information

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BAC

Clone NameMSMg01-289D12
Chromosome2 (Build37)
Map Location 152,287,457 - 152,287,692
singlet/doubletsinglet
Overlap geneEG629114
Upstream gene4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik
Downstream geneLOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289D12.T7 (MSMg01no289_d12.b1)MSMg01-289D12.TJ (MSMg01no289_d12.g1)
ACCAG418831AG418832
length725780
length of high quality
(start - end)
237 (126 - 362)---
definitionCHROMAT_FILE: MSMg01no289_d12.b1 PHD_FILE: MSMg01no289_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:29 2005CHROMAT_FILE: MSMg01no289_d12.g1 PHD_FILE: MSMg01no289_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTC
TGCCTCCCCAGTGCTGGGATTACCCGCGTGCGCCACCACCGCCCAGCAAG
AAAAGATTACTTAGTTGAGGGAAAACAGTAAGACATTGGGGTGTAACATT
CAGCAGATGAAGATGAATTCCTAAGAACAGTAGGAAACTAGCTAGAGATG
ACAACATATGGGTTATGTTAATACTGACGAAGTTGGAGCTACACTAACAA
ATAAGGTCTCGGATGCACAGAGTGTTCAAAGAGGCAAGCCGTGAGAAAAT
GTTATGTCCCATTAAGCTTAGTTCCAGNGCATGCACCCAGGTCAAAGATG
ACAGGCTTCAGAAAAGACCCCCCTCCCAAAAAAAATAAAATTCTGTTTTA
GAAGTATTTCTTGGTTTATTCCACTCAACATAAGCCCCTATTCCATTTCT
CTCTTGCAAATGGTCATTCCATTCTTCTCTGTGACCCACAGAAAGGAGAG
TACTACATGTTGTCCTATTTGAAAGAAAAGAAATAGTCCACCTGAATATA
TACCAGTGACTACCCAGGCTGGCCAAAGAAAGCTTGCTTTGATCAGCACA
CATTGAACACATATGCTGAAATCTCCCACTGAACTCACTAATGTAGCATA
TGTTAAAATAATTAATCTTGATTCT
ATGCTAGGAGAGCCTGGGGGCGCCGGGTTCCACACCNGNNNGANNNANNG
AAGGTTCCAGAAAAAAGGAANNNNAGAAAGNGGGNGAAAAANGAGNNGGN
AAGNNATTTTTGCCGGAAAAACGGGGGAAAGNANNGGGGAAAAGGGNGGN
AGAGNANNAGGGNNANGGAAAGNNNGGNAANANAGGAAAAAANAGAAAAA
AAGGGAAAAAAGAAAAAAGGANAAAAAGGGAAAAGGAAAAGTTTTAGAGG
ANANNGAGNAAAGAGANNAGGGAANAAANAAAAANNGGAGAAAAGGAGGA
GGAAAATTTTTTTTTTTTGAGNAAAGGAAGNAAGAGGGAAAAGAAATTTT
AGGTGGGGTTCCCAAGCAAGACCCCCNGAAAAGNGGAAAGGGGGNGAGGG
GNTTTCCCCCCCCAAAAGNNCAAAAAAAAAAGGGGCCCCNGNCCCCGGGG
GGCCCCGGCGCCCCCGCCCGGGGCCGGGGCNNGGCCGCGCGCGCCCCCGG
GCGCCCCCGACCCGACGCCCGCAAAGCACGAAAAGCACCAGCGCGAACGA
AGCGCCAGCAAACGAAAGAAGACCACGCCGGACAAGCGGACAAGACACCA
CGAGGCAAAGCGACAGACCCCAAACGAAGAAAAGACGACGCAAAAAACGG
ACAAGACAACGCGCGAACGCGCAACAGAAGACCCGCTTTTTTTTTTTTCT
TTTTTAACAAATGACGCCTTGTCCGTTTACAACAGTATGCCCCAGAATTT
ACTTATCCTGATTGTATCTTTCTCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_d12.b1 MSMg01no289_d12.b1 CHROMAT_FILE:
MSMg01no289_d12.b1 PHD_FILE: MSMg01no289_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:29 2005
         (237 letters)



>mm_chr2_152287257_152287893
          Length = 637

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcgtgcgccaccaccgcccagcaagaaaagattacttagttgagggaaaacagtaagaca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 gcgtgcgccaccaccgcccagcaaggaaagattacttagttgagggaaaacagtaagaca 377

                                                                       
Query: 61  ttggggtgtaacattcagcagatgaagatgaattcctaagaacagtaggaaactagctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttggggtgtaacattcagcagatgaagatgaattcctaagaacagtaggaaactagctag 317

                                                                       
Query: 121 agatgacaacatatgggttatgttaatactgacgaagttggagctacactaacaaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agatgacaacatatgggttatgttaatactgacgaagttggagctacactaacaaataag 257

                                                                   
Query: 181 gtctcggatgcacagagtgttcaaagaggcaagccgtgagaaaatgttatgtccca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtctcggatgcacagagtgttcaaagaggcaagccgtgagaaaatgttatgtccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)