BAC Information

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BAC

Clone NameMSMg01-289J22
Chromosome2 (Build37)
Map Location 132,846,031 - 132,846,321
singlet/doubletsinglet
Overlap genenone
Upstream geneRassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908
Downstream geneLOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289J22.T7 (MSMg01no289_j22.b1)MSMg01-289J22.TJ (MSMg01no289_j22.g1)
ACCAG419122AG419123
length724728
length of high quality
(start - end)
235 (129 - 363)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no289_j22.b1 PHD_FILE: MSMg01no289_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:58 2005CHROMAT_FILE: MSMg01no289_j22.g1 PHD_FILE: MSMg01no289_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGATCGTGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGAGT
TCCTTGGTCAGAAGCATATTGTGCCCAATACCATGATGATAGATAAGGCA
TTCTGTCAGTCCGTGAATGGTGGTTTTAGCAGAGGCATTACGTGCAGGAA
AGGCAAATCCATAACCAGAATATGTATCTACTCCAGTAAGAACAAAACGC
TGTCCTTTCCATGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGGT
TGCTGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGCTCAGTGTTG
GTTTCTGCTGTTGTCAGTCNGTCCCCCCCCCCCCCTGTAGCCAGGTCAGC
CTTGGTGAGTGGAAGCCCCCCCCGCTGAAAACAAGAATAACCTCCATCTC
GACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGGATG
GCTGGGGAGAGAGGCTGACTGTCCACAGAACGGGTCATCTTATCCACTTG
ATTATTGAACTCCTCCTCGGCTGAAGTCACCTTTTGGTGAGCATTTACAT
GGGACACAAATATCTTCACATCCTTTGCCCATTTGGAGAGATCTATCCAC
ATACTTCTTCCCCAGATGTCTTTCTCACCAATTTTCCAATTGTGATCTTT
TCCAGTCCCTGACCATCCAGCCAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCAGGGCACTGGGCATAATGCTTC
TGACCCTAAACAATTAAGGTGCCTTTAAAGGCTGCTCAAACGGGATGAAA
TTGGACACCTCCTGCGTAGTGTGTTCAGTGCTTGAGCACGTTCATTCCCA
AGCTTCCCTGACAAGATGTATTTTTCCCTTGAATCTCATTTTGAATTGAT
TTTAGCTAACGTGAGGGCAATGGGGTCCTCAGCTTGCTCCTCAGAACCTG
CAAGCCTCATGTCTTAAGATCGCAGACCATGCCTTTGGTTTTCTGATGAG
AACTGAGATGTCTGTCNTTTTTGCTCCCTCCCCCCACACAGTGGAATTGA
CTGCTTCCAGCAGAGGGCGCCCCCACTCAAAAATTGACCTGGATGCGGAA
TTACTTGGTGCTATTGAACCGCGCTGGGTAACGGCTTTTGCTCCTGAAGG
CTTTGCAGTTCAGCTTGTTTTTGGCAAGTCATTTATTCCTAAGGTGTTAA
AGTGTTAAGAAGGCTTGTTCCAATATTTTCCATAGTTGGCTAAGTGATAA
ACTGTACTATTAATGAGGGTGGTAGCAGATCATAAACTGGGTTAGCTAAA
TATCTGCTGATTTTATTTACTCATAAATCCCATAAATATTGGTAGGACGT
TTTCTGTGTGCAAGGCATGCAAATGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_j22.g1 MSMg01no289_j22.g1 CHROMAT_FILE:
MSMg01no289_j22.g1 PHD_FILE: MSMg01no289_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:58 2005
         (290 letters)



>mm_chr2_132845828_132846521
          Length = 694

 Score =  474 bits (245), Expect = e-138
 Identities = 278/293 (94%), Gaps = 8/293 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   cagggcactgggcataatgcttctgaccctaaacaattaaggtgcctttaaaggctgctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cagggcactgggcataatgcttctgaccctaaacaattaaggtgcctttaaaggctgctc 263

                                                                       
Query: 64  aaacgggatgaaattggacacctcctgcgtagtgtgttcagt------gcttgagcacgt 117
           ||||||||||||||||||||||||||  |||||||||| |||      ||||||||||||
Sbjct: 264 aaacgggatgaaattggacacctcct--gtagtgtgtttagtgctgaagcttgagcacgt 321

                                                                       
Query: 118 tcattcccaagcttccctgacaagatgtatttttcccttgaatctcattttgaattgatt 177
           |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 322 tcatccccaagcttccctgtcaagatgtatttttcccttgaagctcattttgaattgatt 381

                                                                       
Query: 178 ttagctaacgtgagggcaatggggtcctcagcttgctcctcagaacctgcaagcctcatg 237
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct: 382 ttagctaacgtgagggcaatggggtcctcagcttgctcctcagaacccgtaagcctcgtg 441

                                                                
Query: 238 tcttaagatcgcagaccatgcctttggttttctgatgagaactgagatgtctg 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttaagatcgcagaccatgcctttggttttctgatgagaactgagatgtctg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 694
Length adjustment: 9
Effective length of query: 281
Effective length of database: 685
Effective search space:   192485
Effective search space used:   192485
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)