Query= MSMg01no289_l17.b1 MSMg01no289_l17.b1 CHROMAT_FILE:
MSMg01no289_l17.b1 PHD_FILE: MSMg01no289_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:06 2005
(687 letters)
>mm_chr2_108416654_108417740
Length = 1087
Score = 1216 bits (629), Expect = 0.0
Identities = 670/684 (97%), Gaps = 2/684 (0%)
Strand = Plus / Minus
Query: 5 gaattccatatgtg-tttcttaaaatatttagtcacccacccagaataagaataactgca 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattccatatgtgcttt-ttaaaatatttagtcacccacccagaataagaataactgca 829
Query: 64 gttcatatttataagttcagttgacgtgtatctctgggaagtttggtgtcttctttctaa 123
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gttcatatttaaaagttaagttgacgtgtatctctgggaagtttggtgtcttctttctaa 769
Query: 124 agctctgttttacttttccctgatgtttctaagattacttctgtaactactgtgagtcaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 agctctgttttacttttccctgatgtttctaagattacttctgtaactactgtgagtcaa 709
Query: 184 aactctttgtaatgttttctaatttatctttgttgttttacataggaatgtaaataacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aactctttgtaatgttttctaatttatctttgttgttttacataggaatgtaaataacca 649
Query: 244 ttaatttaaaattttcttcctaactctcaccaaattcaggaagctttagtttatcttctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttaatttaaaattttcttcctaactctcaccaaattcaggaagctttagtttatcttctt 589
Query: 304 ggaatttctggaaacatattaagatagttcttaaataataattccataccctttcctttt 363
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 588 ggaatttctgggaacataataagatagttcttaaataataattccataccctttcccttt 529
Query: 364 ttaaacattcccccacatttcaatggatcttccaggaaaatgctaactaatattggaaat 423
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttaaacatttcattagatttcaatggatcttccaggaaaatgctaactaatattggaaat 469
Query: 424 agcctacgtcattgtgctgtttttgatactgctaagaatgactccagggcttcggtgtta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agcctacgtcattgtgctgtttttgatactgctaagaatgactccagggcttcggtgtta 409
Query: 484 tactaagcatggcattgcaatactgcattcacaagtgttcatggctttctagagttttaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tactaagcatggcattgcaatactgcattcacaagtgttcatggctttctagagttttaa 349
Query: 544 ttgaggaacttaaaactacacaattatttttatcanattcaatttgtcattaaaggaaat 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 348 ttgaggaacttaaaactacacaattatttttatcaaattcaatttgtcattaaaggaaat 289
Query: 604 ctagactctctatatttcccagtgtaaaatggttttgttctccatctattcttggcatga 663
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctagactctttatatttcccagtgtaaaatggttttgttctccatctattcttggcatga 229
Query: 664 tttaaatactttaatagtaataat 687
||||||||||||||||||||||||
Sbjct: 228 tttaaatactttaatagtaataat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_l17.g1 MSMg01no289_l17.g1 CHROMAT_FILE:
MSMg01no289_l17.g1 PHD_FILE: MSMg01no289_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:06 2005
(401 letters)
>mm_chr2_108253342_108254142
Length = 801
Score = 677 bits (350), Expect = 0.0
Identities = 384/400 (96%), Gaps = 8/400 (2%)
Strand = Plus / Plus
Query: 1 aatatgcattatcactatgtatcacaaaattcttccttggaggcttgattgagggactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatgcattatcactatgtatcacaaaattcttccttggaggcttgattgagggactaa 260
Query: 61 tcagatttatatggatcaattttttaaatcagaagtgggagaaacaaactgctgtagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatttatatggatcaattttttaaatcagaagtgggagaaacaaactgctgtagttt 320
Query: 121 tgcttgtgtgagcttgccaagcagccaactacactttggctgtatgaaacaaacaaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttgtgtgagcttgccaagcagccaactacactttggctgtatgaaacaaacaaacaa 380
Query: 181 acaaacaaacaaacaaacaacaacaagaacaacaacaaactggacagtcaattaaaaaag 240
||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 acaaacaaacag--------caacaagaccaacaacaaactggacagtcaattaaaaaag 432
Query: 241 agtataggaacagctcatatgaaatttattgttgattgttccattgacccacccccaaga 300
|||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 433 agtataggaacagctcatatgaaatttactgttgattgttccattgacctaaggccaaga 492
Query: 301 ggtagatcatagatgtagaagctacctttgaattgtgagtttcactacagtaaagtgatg 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggtagatcatagatgtaaaagctacctttgaattgtgagtttcactacagtaaagtgatg 552
Query: 361 gaaagcaacagggtttattgggggggggggggagatgatg 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaaagcaacagggtttattgggggggggggggagatgatg 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
