BAC Information

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BAC

Clone NameMSMg01-289O11
Chromosome2 (Build37)
Map Location 10,128,902 - 10,129,135
singlet/doubletsinglet
Overlap geneItih5
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2
Downstream geneSfmbt2, LOC100040690, LOC100040703, LOC667192, Prkcq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289O11.T7 (MSMg01no289_o11.b1)MSMg01-289O11.TJ (MSMg01no289_o11.g1)
ACCAG419329AG419330
length748782
length of high quality
(start - end)
234 (124 - 357)350 (74 - 423)
definitionCHROMAT_FILE: MSMg01no289_o11.b1 PHD_FILE: MSMg01no289_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:18 2005CHROMAT_FILE: MSMg01no289_o11.g1 PHD_FILE: MSMg01no289_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCACGAATACGAGAACAAAAGTCAACATTTTACTGACTTTCAACAGCA
ACAATAAAAGTCAGCTGACACTATAAATGCCATCTAACAACTTCTCTAAA
CTTGGAATTGTGTGTTGGGAGAGGCATAGATTTTGTGAGAGCTACTCCTG
AATTATTGAGACCTTAATTCTTTGCCAAAGGTATGTCTGAGGGTTCTTTC
TATTCCATTTCTCACAAAGGAATCCTCACTGGACGTGAATTTTGTTAACA
TGGTACTGTTTTGGTTTATTTCGTGCTGTTTTGTTTAGTTTTCCATTGTT
TTGAACCATGTGTTACTATGTACCCCATAATGTCCTGAAACTTGCCATGT
ACCACAGGCCACCCCCCCCACTTGAGATCCTTCTGCCTCAGTCTCCTAAG
TAAGTACTTGCATTCCAAAGTGTGTCACCATAGTCAACTGACTGGGCTAC
TGAGTGGCCCTTTCAGTGTGCCCTGTTTCACTCATGCTATTCTCTCTGTT
GGGGTGTTTCCTCTAACGGGACATTTGCTGTCTTAAATCTATAGTTTCTA
TCAGTGGCTTACATGAGTCAGCTTAAGGATGTCCGTATGAAGGAATAGCT
AGGTGGTAAAATAGACATTTGGCATCAACTGAACGTCACTCCCCAGGCAG
ATTTCTGTCTCAGGTGAAAGCGTGATCATTTCCCTGCGTACGTTTCTG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGACAGCCTGGTCTACAGAGAGTTA
CAGGACAGCCTGGGATATGACCAAACCACCACCAAAAAAAACAAAAAACA
AAAACCAACCAACCAAACAAACAAACAAACAAAAAAAAACCCAAAACTCT
GTCTCAAAAAAACAAAAGAAAAGGCCAGGGAATGGAGGGGAAAGGGTTCA
TGATAAATGTGGTGGCCCACACCTTTAATCCCAGCACTCATGAGGCAGAG
GCAGGCGTCTGGTCTACATACTGAGCTCTAGGATAACCAGGGCTATGAAG
AGAGACCATGTCTCAAACATAAACATAAAATAAAATGGGGGGGNGGGAGG
GAGGAGGNTTTTTTCCCCCCCCCCCCACAAAAAAAAAAAANNANNGGGGG
GGNGGGGNNNNNCGNACNNANAAAAAAAAAAAAAAACAAAACCACACAAC
CCGCCAACACCAACCACCCACACGACACACCAACACCAAACCAACACACC
ACAACAAACCAACCAACACAACTAAAAAAAACCAACAACCCAAACAAAAA
AACAACCCCAACAAACAAAAAACACACAAAACCAACAAAAACACAACACA
AACACAAAGACCACGCTAACACCCATAATAAACAGTATAACAAACCCCAT
AAGTCATTTAACTCTATAACCATATTCTTAAATAATACATCATCACCACT
TCATATTTATTAACTCACTTCTATTTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_o11.b1 MSMg01no289_o11.b1 CHROMAT_FILE:
MSMg01no289_o11.b1 PHD_FILE: MSMg01no289_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:18 2005
         (234 letters)



>mm_chr2_10128753_10129386
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatgccatctaacaacttctctaaacttggaattgtgtgttgggagaggcatagattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 taaatgccatctaacaacttctctaaacttggaattgtgtgttgggagaggcgtagattt 324

                                                                       
Query: 61  tgtgagagctactcctgaattattgagaccttaattctttgccaaaggtatgtctgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtgagagctactcctgaattattgagaccttaattctttgccaaaggtatgtctgaggg 264

                                                                       
Query: 121 ttctttctattccatttctcacaaaggaatcctcactggacgtgaattttgttaacatgg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 263 ttctttctattccatttctcacaaaggaaccctcactggacgtgaattttgttaacatgg 204

                                                                 
Query: 181 tactgttttggtttatttcgtgctgttttgtttagttttccattgttttgaacc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tactgttttggtttatttcgtgctgttttgtttagttttccattgttttgaacc 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)