BAC Information

Click to search

BAC

Clone NameMSMg01-290A06
Chromosome2 (Build37)
Map Location 116,441,944 - 116,516,010
singlet/doubletdoublet
Overlap genenone
Upstream geneBC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290A06.T7 (MSMg01no290_a06.b1)MSMg01-290A06.TJ (MSMg01no290_a06.g1)
ACCAG419411AG419412
length748751
length of high quality
(start - end)		700 (45 - 744)675 (77 - 751)
definitionCHROMAT_FILE: MSMg01no290_a06.b1 PHD_FILE: MSMg01no290_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:27 2005CHROMAT_FILE: MSMg01no290_a06.g1 PHD_FILE: MSMg01no290_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,515,315 - 116,516,010)(116,441,944 - 116,442,618)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAAAGAGGGCAGCTGAACAGAGGTAAGTTGCTTAGCTGGGGCCAC
ATGTAGTGTGCCACGTGTCAGACGGAAAACAGCATACAGTAGACAAAACA
TGTCATTTACCAAAAGATTGTGAACCTTGACAATGGAGTTCACTTTTAAC
ATTTTCTGTGTGTGTTTTCTATAAGATATAGTTTAGGGTTATATTCACAA
TTAGTATAAAGTTTTGTTTCTGATGGAAACCTATGCCCCCACATTGTAAT
TCCGGCTTGCAAGGTCCCAGGAAGGGCAGGTACACTTTGATATAGAACTT
TCAGTAGAGTTACCTTTACTCTGGATGTAGCAGAATTGCATCAAATTAGC
CAATGTATTTTCATTCTGTCTTTCTTTACTTTTAATACAAAACTTTACTG
CTCACAGTTCTGCCCTGAAGTATCAGGGGAATCACAACAGGTGCAGCCCA
GCTTGCTTCCCATCCTATAAAGAGGAAAACCATCACTCATTACGCGCTTC
TTCTGTTCTCTGGTATCAAATGAAATGAAAATGATATGTAGCCAAATAGT
ATGCAAGGCTCTTAGAATTCTTTCTCAAGACCAGAGAAGAAGACACAGAC
ATAAATTCTAATTGTCAACTTAGCTTTTTGTTGGGCTTAATCTCTCTGGG
GTTGGTATATTGTTGGTTGGTCAATCTTTTATATGTTTATTCAGGTGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGATTTCTTTAAAACTATGTT
ATGTCAGAAATCATACTTTGCCCTGCAGAACCTTCTAGACTTATGAAAAC
AAGCTCACGTTCATCCTTGCCAACATGAGGAAAATCACATCCTGCTCATG
GTGTTGTGACGAGTAAGAGAGGCAAGCTTGAGGGTGCCTGCCATGAAGAC
TTGACACATCTTTTCATCATGCTAAAGAGTGAGCTGAGAGTCATCGTAAA
GAGACACAATGGCCTAAAATTAGTTTCTACTTCTTATGCTATGTTGGGAA
TATTAAGTCATATGTATTGCATTGCTTTTAAGAAACCTTAAGCATGGGTA
AGTTTCAATGATCTGACTCTACAAGCCAGAGACAACATTTTATCTCTAGG
CTATAGTTATGTTGAAGAATCTATGCAGTCTAAACAAGTGGTCTGTTCTA
TGGGGTCATGCTGCCCTCAGTCTGGATAAATTAGGGTTTTAGTAAAGTAC
TGCTTCTCTGCCCTATGCATGACCTTTTTCTTAAAAGCATAGCTTTTAAT
AACCATTTTTATTAGAAAAAGTTGACAGAAATAGATAATTAAGGCAAAAG
TCAAAAAGTAAGAGATTCACAAAAAGACGGTACCTGCTGTGTATTTTCAG
TGTGGTTCATGGTTAAATGCAGATTCCAACAGAGGCTACGTGTAAGCCTG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_a06.b1 MSMg01no290_a06.b1 CHROMAT_FILE:
MSMg01no290_a06.b1 PHD_FILE: MSMg01no290_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:27 2005
         (700 letters)



>mm_chr2_116515111_116516210
          Length = 1100

 Score = 1268 bits (656), Expect = 0.0
 Identities = 686/696 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaaagagggcagctgaacagaggtaagttgcttagctggggccacatgtagtg 64
           |||||||||||||||  ||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 900 gaattctgaaagaggaaagctgaacagagggaagtcggttagctggggccacatgtagtg 841

                                                                       
Query: 65  tgccacgtgtcagacggaaaacagcatacagtagacaaaacatgtcatttaccaaaagat 124
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 840 tgccacgtgtcagaaggaaaacaacatacagtagacaaaacatgtcatttaccaaaagat 781

                                                                       
Query: 125 tgtgaaccttgacaatggagttcacttttaacattttctgtgtgtgttttctataagata 184
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 780 tgtgaaccttgataatggagttcacttttaacattttctatgtgtgttttctataagata 721

                                                                       
Query: 185 tagtttagggttatattcacaattagtataaagttttgtttctgatggaaacctatgccc 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tagtttagggctatattcacaattagtataaagttttgtttctgatggaaacctatgccc 661

                                                                       
Query: 245 ccacattgtaattccggcttgcaaggtcccaggaagggcaggtacactttgatatagaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccacattgtaattccggcttgcaaggtcccaggaagggcaggtacactttgatatagaac 601

                                                                       
Query: 305 tttcagtagagttacctttactctggatgtagcagaattgcatcaaattagccaatgtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tttcagtagagttacctttactctggatgtagcagaattgcatcaaattagccaatgtat 541

                                                                       
Query: 365 tttcattctgtctttctttacttttaatacaaaactttactgctcacagttctgccctga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tttcattctgtctttctttacttttaatacaaaactttactgctcacagttctgccctga 481

                                                                       
Query: 425 agtatcaggggaatcacaacaggtgcagcccagcttgcttcccatcctataaagaggaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtatcaggggaatcacaacaggtgcagcccagcttgcttcccatcctataaagaggaaa 421

                                                                       
Query: 485 accatcactcattacgcgcttcttctgttctctggtatcaaatgaaatgaaaatgatatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 accatcactcattacgcgcttcttctgttctctggtatcaaatgaaatgaaaatgatatg 361

                                                                       
Query: 545 tagccaaatagtatgcaaggctcttagaattctttctcaagaccagagaagaagacacag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tagccaaatagtatgcaaggctcttagaattctttctcaagaccagagaagaagacacag 301

                                                                       
Query: 605 acataaattctaattgtcaacttagctttttgttgggcttaatctctctggggttggtat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acataaattctaattgtcaacttagctttttgttgggcttaatctctctggggttggtat 241

                                               
Query: 665 attgttggttggtcaatcttttatatgtttattcag 700
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 attgttggttggtcaatcttttatatgtttattcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_a06.g1 MSMg01no290_a06.g1 CHROMAT_FILE:
MSMg01no290_a06.g1 PHD_FILE: MSMg01no290_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:27 2005
         (675 letters)



>mm_chr2_116441744_116442818
          Length = 1075

 Score = 1290 bits (667), Expect = 0.0
 Identities = 673/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagatttctttaaaactatgttatgtcagaaatcatactttgccctgcagaaccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacagatttctttaaaactatgttatgtcagaaatcatactttgccctggagaaccttct 260

                                                                       
Query: 61  agacttatgaaaacaagctcacgttcatccttgccaacatgaggaaaatcacatcctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacttatgaaaacaagctcacgttcatccttgccaacatgaggaaaatcacatcctgct 320

                                                                       
Query: 121 catggtgttgtgacgagtaagagaggcaagcttgagggtgcctgccatgaagacttgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggtgttgtgacgagtaagagaggcaagcttgagggtgcctgccatgaagacttgaca 380

                                                                       
Query: 181 catcttttcatcatgctaaagagtgagctgagagtcatcgtaaagagacacaatggccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcttttcatcatgctaaagagtgagctgagagtcatcgtaaagagacacaatggccta 440

                                                                       
Query: 241 aaattagtttctacttcttatgctatgttgggaatattaagtcatatgtattgcattgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattagtttctacttcttatgctatgttgggaatattaagtcatatgtattgcattgct 500

                                                                       
Query: 301 tttaagaaaccttaagcatgggtaagtttcaatgatctgactctacaagccagagacaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaagaaaccttaagcatgggtaagtttcaatgatctgactctacaagccagagacaac 560

                                                                       
Query: 361 attttatctctaggctatagttatgttgaagaatctatgcagtctaaacaagtggtctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttatctctaggctatagttatgttgaagaatctatgcagtctaaacaagtggtctgt 620

                                                                       
Query: 421 tctatggggtcatgctgccctcagtctggataaattagggttttagtaaagtactgcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tctatggggtcatgctgccctcagtctggataaattagggttttagtaaagtactgcatc 680

                                                                       
Query: 481 tctgccctatgcatgacctttttcttaaaagcatagcttttaataaccatttttattaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgccctatgcatgacctttttcttaaaagcatagcttttaataaccatttttattaga 740

                                                                       
Query: 541 aaaagttgacagaaatagataattaaggcaaaagtcaaaaagtaagagattcacaaaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaagttgacagaaatagataattaaggcaaaagtcaaaaagtaagagattcacaaaaag 800

                                                                       
Query: 601 acggtacctgctgtgtattttcagtgtggttcatggttaaatgcagattccaacagaggc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acggtacctgctgtgtattttcagtgtggttcatggttaaatgcagattccaacagaggc 860

                          
Query: 661 tacgtgtaagcctgt 675
           |||||||||||||||
Sbjct: 861 tacgtgtaagcctgt 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |