BAC Information

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BAC

Clone NameMSMg01-290C05
Chromosome2 (Build37)
Map Location 150,446,350 - 150,624,904
singlet/doubletdoublet
Overlap geneAcss1, Vsx1, Entpd6, LOC100043605, Pygb
Upstream geneEG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik
Downstream geneAbhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290C05.T7 (MSMg01no290_c05.b1)MSMg01-290C05.TJ (MSMg01no290_c05.g1)
ACCAG419501AG419502
length712709
length of high quality
(start - end)
194 (115 - 308)239 (109 - 347)
definitionCHROMAT_FILE: MSMg01no290_c05.b1 PHD_FILE: MSMg01no290_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:36 2005CHROMAT_FILE: MSMg01no290_c05.g1 PHD_FILE: MSMg01no290_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,624,714 - 150,624,904)(150,446,350 - 150,446,586)
sequence
GCGGCCGCTAAACGACTCACTTATCANGAGGAGCCGCGGAATTCTCTTAG
TTACTCAACAAAGTCCCAGGGCATGGTGCTCACCTGAAAACCAGGCAGGA
AGATGTTACACCAAATATAATAGGCAAAACCACACAGCATCTTCCACAGA
ATGCAAGTTCATAAATGAAAACCACCCCACCCCACTCCAAACATCTAGAA
CCACAAAGGATCCAACTGAGAACACATCTCTGGTCTCTTGGAGCACCTGC
ACAAGGGAGTACACACACACACACACACACACACACACACACACACACAC
ACACAAGCTATTTTTTTGTAGGAGTATGGTCCTCTAATTCCAGACTCGGT
ATTTTTATACACCACCGATCACAAATTCAAGGTACAGCAGGTTGAGAAGA
AAAGGATTAAGGGGAGAGAGAGAGAGAGGGAGGGAGGATAGGAGAAAAAG
AAAGTAACTTTTGGGACTGGAATGCTTAACCTGTGAAACAATGTATCTAT
GCACTGAAACACGCCAAGGTCAAAACAAAAACCCCTCAAAAGTTATCTTG
GAATCAGGAAATAGCATAGCCAGAATCAAAACTGTGGCTAAGTAACGCTG
GACCATATGGACTTGAAAAGAATTAAGAGGGAAAAAAATACTGATACTGA
TGATTAAAAACACTCCCTGCATGCATACGTCGGATTCCAGAATTGGAAAT
AAATATGTCTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAACCCAGAAATCATTGTGGAGAGGTATCAGCAAAGAAAGATA
GAACCCCCAAAATCTGAAGAGACTCAAGGGTGGCCCAGGCCTTCCCACAG
GAAATGACTCCTTTACAGGAAATAGGAAACATGTTCAGAAACCACATAAG
ACTGGAGAACTCCATGTCTCTCAAATCTTTAAAATCTGTAGTTTGACTGA
GACATAGCTGAGTGGTGGAGTTCAAGTTCAGCATTCAGAAGTCTCTGGGC
TCAACTCTGTTACGATTGGAATCTTAGATGTTCTCCAAAGACTATTTTTT
TTGTCACCACCCTCGCCGGTGCTGTTGGGGCATTGTGAAACTTTTAGGAG
GTGGCAGTCTGAAGAGAGAAAGAAAGGTCATTCAAGGGGTGGTCTTTGAA
GGATATATTCAATCCCTTCTCCACTACCATGATTTAAGCAGCTTTGTTTG
CCACATGCTTCCCACCAAGATAAAAGGTGTTGCTACCGGACAAAATACAG
CCCCTCCAACCAACCATAAACTGTAACCCTGAGCCAAAATAAAACCTTCC
CATCATTTAAGTTAATTGCCTCAGGCATTTTGCCTCATCGATAGAATGCA
AACACATACCTAACATCACATAACAGAAATAACTACATAGAATTCACGTT
TTCTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_c05.b1 MSMg01no290_c05.b1 CHROMAT_FILE:
MSMg01no290_c05.b1 PHD_FILE: MSMg01no290_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:36 2005
         (194 letters)



>mm_chr2_150624559_150625152
          Length = 594

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataataggcaaaaccacacagcatcttccacagaatgcaagttcataaatgaaaacca 60
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atataatagacaaaaccacatagcatcttccacagaatgcaagttcataaatgaaaacca 287

                                                                       
Query: 61  ccccaccccactccaaacatctagaaccacaaaggatccaactgagaacacatctctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccccaccccactccaaacatctagaaccacaaaggatccaactgagaacacatctctggt 227

                                                                       
Query: 121 ctcttggagcacctgcacaagggagtacacacacacacacacacacacacacacacacac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctcttggagcaccttcacaagggagtacacacacacacacacacacacacacacacacac 167

                      
Query: 181 acacacacaca 191
           |||||||||||
Sbjct: 166 acacacacaca 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no290_c05.g1 MSMg01no290_c05.g1 CHROMAT_FILE:
MSMg01no290_c05.g1 PHD_FILE: MSMg01no290_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:36 2005
         (239 letters)



>mm_chr2_150446150_150446788
          Length = 639

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatctgaagagactcaagggtggcccaggccttcccacaggaaatgactcctttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatctgaagagactcaagggtggcccaggccttcccacaggaaatgactcctttacag 260

                                                                       
Query: 61  gaaataggaaacatgttcagaaaccacataagactggagaactccatgtctctcaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaataggaaacatgttcagaaaccacataagactggagaactccatgtctctcaaatct 320

                                                                       
Query: 121 ttaaaatctgtagtttgactgagacatagctgagtggtggagttcaagttcagcattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaatctgtagtttgactgagacatagctgagtggtggagttcaagttcagcattcag 380

                                                                    
Query: 181 aagtctctgggctcaactctgttacgattggaatcttagatgttctccaaagactat 237
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aagtctctgggctcaactctgttacgattcgaatcttagatgttctccaaagactat 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)