BAC Information

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BAC

Clone NameMSMg01-290G17
Chromosome2 (Build37)
Map Location 133,198,137 - 133,198,373
singlet/doubletsinglet
Overlap genenone
Upstream geneProkr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
Downstream geneA430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290G17.T7 (MSMg01no290_g17.b1)MSMg01-290G17.TJ (MSMg01no290_g17.g1)
ACCAG419702AG419703
length756758
length of high quality
(start - end)
688 (46 - 733)239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no290_g17.b1 PHD_FILE: MSMg01no290_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:58 2005CHROMAT_FILE: MSMg01no290_g17.g1 PHD_FILE: MSMg01no290_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTCTTACCACGTTCCCCACCATCCTGAAGCAGCTGGTCTGA
TAGAAAGATGGAATGGCCTTTTGACACACGCAGTTACAGCGCCAATTAGG
TGGTAACAGCTTGGAAGGCTGGGGTAGAGTTCTTCAGAAGGCAGTATATG
CTTTGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATT
CATGGGTCCAGGAATCAAGGGGTGGAAAACGGAATAGTTCCACTTACTAT
CACTCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTC
TAGGTTCTGCTGGCCTAGAAGTTTTGGCTCCAGAGAGGGGAGTGCTCCTA
CCAGGAGCTACAACAAACATTCCATTGAACTGGAAGCTCAGACTTCCCCC
TGGTCATTTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAA
TAACAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGAGAAATTGGA
TTACCTCTTCACAATGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGA
TCCCTTAGGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATG
GGAAACTACAACAGCCTAATCCAAGCAGGATGACAAAGAACGCAGATCCA
TCAGGAATGAAGGTATGGGTCAATCCTCCAGGATAAGAGCCAAGACCTGC
TGAGGT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGGAAACCTGACACTTTTAA
TGAATCTGATAACAGGAATCTCTGGCCGCGTAATATGAAACCAGCTTCTA
AAGTTAGTTTCTGCCCAGATAGGCATAGGACCCAGAAATTTTCGTGAATT
CCAGGCTGTCATGGGAAAGCAGAGAGGGGAGCCTCCCAGATGAGACAAAG
GCATGTGAAATGATGCGCTCTGGAATCTGAATGCCATGAGGAAAGCTAAA
TCAGAGAAGAAACAGCTAGCCGTGAAAGAGAGCTGAACTTTACCTCCTAT
GTGGTTAAGTAGTGATGTTATGTTATGCCCACCCCGCCCCTTATGCATCG
ACTTATGTATTATGTGCTTATTTATTCATTCTTTCATTATATAACATGGA
GACAGAAAACAGTGTGCAGAGTGTATACAGTATACTGGATCTAGACTGTC
TAGAAATTTCAAAACATTAAGACAATCTTAGAAGTGATCAAAAGCCAACA
AAGGTCTCTACATGAAGATTAGTAGACTTTAGCTCAAAGTTACATTATTT
TTCTCCATGCTACAAAATGAACAAGTAAATGCATTCATTTATTCATTATT
AACATCCATATCATATTCATGTGGCTATGAAGTTGGCTTTTTAAATACAG
CAGTGTGACAGTCCCATTGACGAGGGTGAGATAATGGTACAGGACAGGGA
AGTAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_g17.g1 MSMg01no290_g17.g1 CHROMAT_FILE:
MSMg01no290_g17.g1 PHD_FILE: MSMg01no290_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:58 2005
         (239 letters)



>mm_chr2_133197937_133198575
          Length = 639

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatatgaaaccagcttctaaagttagtttctgcccagataggcataggacccagaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taatatgaaaccagcttctaaagttagtttctgcccagataggcataggacccagaaatt 378

                                                                       
Query: 61  ttcgtgaattccaggctgtcatgggaaagcagagaggggagcctcccagatgagacaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttcgtgaattccaggctgtcatgggaaagcagagaggggagcctcccagatgagacaaag 318

                                                                       
Query: 121 gcatgtgaaatgatgcgctctggaatctgaatgccatgaggaaagctaaatcagagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcatgtgaaatgatgcgctctggaatctgaatgccatgaggaaagctaaatcagagaaga 258

                                                                    
Query: 181 aacagctagccgtgaaagagagctgaactttacctcctatgtggttaagtagtgatg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aacagctagccgtgaaagagagctgaactttacctcctatgtggttaagtagtgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)