BAC Information

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BAC

Clone NameMSMg01-290M22
Chromosome2 (Build37)
Map Location 68,923,039 - 68,923,303
singlet/doubletsinglet
Overlap geneLass6
Upstream geneB3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443
Downstream geneNostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290M22.T7 (MSMg01no290_m22.b1)MSMg01-290M22.TJ (MSMg01no290_m22.g1)
ACCAG419985AG419986
length746748
length of high quality
(start - end)
265 (440 - 704)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no290_m22.b1 PHD_FILE: MSMg01no290_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:27 2005CHROMAT_FILE: MSMg01no290_m22.g1 PHD_FILE: MSMg01no290_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAAGGGCTACCTCATAGCATGCCTCCTGCTACAGAACGAGTGTG
GGAGTCAAGCTGCGATTTCTTCCGCATCAGACATTTATTGTTGACTTCAA
AAAGTTCTCCCACTTATGTGTAATTACTATCCTAGCAAATGGCTCTGAAA
TTTCAGCTTCTTAAGCATAAGGCAGAGTGGTCCTTTAAAAGTAAAATAAA
ACATAGGCCCTATGAGATAAAATTAAGATAAATTAAGAATCAGTTACTTC
CAAGACGAAGCACTTATGTGCATGCCTTCTTATATAAAGCAGATCCTTGC
CATGTATGTGTGCTGTTTTTTTGCCAACACCACCATGTCTTCCATAACTG
TGGCAGCACTGGACTTTGAAGCTCTGCTGTAATATTTACAAAAGAATCCA
TGCTGGTACAACTTAATGTTAGCTAATGCTTTTAACAAAAGGCATGGTAG
ATTTAGATATCATTTCAACCTCCTAAAAAGTCTTTATAGAACAGTTCTCT
CCGGATGGGAGGGGGTGGCTGACACCCTAATTCTGTTTCTTCCAGTTGGT
GAAAATAGACCACTTCAAGGCTCCAAGAGTGTAAGGCTCCGACTAAAGCC
ATTTCTGGGTGCTGCATCAAGTGCTGCTGAGATTTTTATCACCACACCAC
TTGAGAAATATTTTTCAAGGCTGACAGCTCAAAAGGAAAGAAAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGGATG
CATCTGGAGGATATTATCCTGAGTGAGGTAACCCAATCACAAAAGAACAC
ACATGGTATGCACTCACTAATAAGCAGATATTTGCCCAGAAACTTAGAAT
ATCCAAGATACAATTTGCAAAACACATGAAACAAGAAAGACCAAAGTGTG
GATACTTTGTTTCTTCTTAGAATGGGGAAACAAAATATCCATGAAAGGAG
TTACAGAGACAAAGTTTGGAGCTAAGATGGAAGGAAAGACCATCCAGAGA
CTGGCCCACCCGGGGTTCCTTCTTATACCCCCCCACCAAGCCCAAACACT
AGTGCATATGCCAGAAAGATTTTGCTTACAGGAAAAAGACATAGCTCTCT
CTTGTGAGTCTATGCCAATGCCTGGCAAATACAGAAGTGGATGCTCACAA
TCATCTATTGGATGGAACACGGGGCCCCTAATGAAGGAGCTAGAGAAAGT
ACCCAGGAGCTAAAGGGGTCTGCAACCTATAGGAGGAACAAAGATATGAA
CTAACCAGTACCCTCCAGAACTGTGTCTCTAGTTGCAATGAGGCAGAGGA
TGGCCTAGTCGGCCATCATTGGGAGGAAAGGCCCTTAGTATTACGAAGAT
CATATGCCCCAGTACAGGGGAATGCCAGGGTCAGGAAGCAGAAGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_m22.b1 MSMg01no290_m22.b1 CHROMAT_FILE:
MSMg01no290_m22.b1 PHD_FILE: MSMg01no290_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:27 2005
         (265 letters)



>mm_chr2_68922839_68923503
          Length = 665

 Score =  505 bits (261), Expect = e-147
 Identities = 264/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaatccatgctggtacaacttaatgttagctaatgcttttaacaaaaggcatggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaatccatgctggtacaacttaatgttagctaatgcttttaacaaaaggcatggta 260

                                                                       
Query: 61  gatttagatatcatttcaacctcctaaaaagtctttatagaacagttctctccggatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttagatatcatttcaacctcctaaaaagtctttatagaacagttctctccggatggg 320

                                                                       
Query: 121 agggggtggctgacaccctaattctgtttcttccagttggtgaaaatagaccacttcaag 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agggggtggctgacaccctaattctgtttcttccagtttgtgaaaatagaccacttcaag 380

                                                                       
Query: 181 gctccaagagtgtaaggctccgactaaagccatttctgggtgctgcatcaagtgctgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccaagagtgtaaggctccgactaaagccatttctgggtgctgcatcaagtgctgctg 440

                                    
Query: 241 agatttttatcaccacaccacttga 265
           |||||||||||||||||||||||||
Sbjct: 441 agatttttatcaccacaccacttga 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)