Query= MSMg01no290_o13.b1 MSMg01no290_o13.b1 CHROMAT_FILE:
MSMg01no290_o13.b1 PHD_FILE: MSMg01no290_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:34 2005
(711 letters)
>mm_chr2_62866247_62867357
Length = 1111
Score = 1255 bits (649), Expect = 0.0
Identities = 687/701 (98%), Gaps = 4/701 (0%)
Strand = Plus / Minus
Query: 5 gaattctctaaagtatcgcgcaatgatctggaaaggccatgtggggagggggaaggaaca 64
|||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 903 gaattctctaaagtattgcacaatgatgtggaaaggccatgtggggagggggaaggaaca 844
Query: 65 gagtgccatg--tattatgtccctattgagctaaaataaagaatatggatcaaagatcac 122
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 843 gagtgc--tgtatattatgtccctattgagttaaaataaagaatatggatcaaagatcac 786
Query: 123 atcctaggatccaacatgttactactggtgttcagtatgcctgtaacaaaaatgagaata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 atcctaggatccaacatgttactactggtgttcagtatgcctgtaacaaaaatgagaata 726
Query: 183 ttttgatctttatcttcaataagaatggtgctgaaagaataaaaatgaaatttagcatga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttttgatctttatcttcaataagaatggtgctgaaagaataaaaatgaaatttagcatga 666
Query: 243 tttatagtacccagaatttatctcaagactattaaaaatgaattatgttcttccagattt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttatagtacccagaatttatctcaagactattaaaaatgaattatgttcttccagattt 606
Query: 303 atgatagtcaatgagtgatataagatattgggacacataaaattgttccctaaacccaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgatagtcaatgagtgatataagatattgggacacataaaattgttccctaaacccaaa 546
Query: 363 gaacaactttatttttcataattatttttcatgaaatagatgatatagaaatttaatttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaacaactttatttttcataattatttttcatgaaatagatgatatagaaatttaatttc 486
Query: 423 aaaggaaattgtgggaaaaaattgtcatttgggtgtaattctgaaagaaagtacagcaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaggaaattgtgggaaaaaattgtcatttgggtgtaattctgaaagaaagtacagcaaa 426
Query: 483 ggaggaggaggattcagtggccaatgtttcttttgtgttttatagtgaagtattcaaaat 542
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 425 ggaggaggaggattcagtggccaatgtttcttttatgttttatagtgaagtattcaaaat 366
Query: 543 acttaacacacaagtaagaactggttataacctttaaaataggttggtaagccaataagc 602
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 365 acttaacacacaaataagaactggttataacctttaaaatagattggtaagccaataagc 306
Query: 603 taaaagcctatttagtgaaattaagaattgatattcaaactgatacagattagtttcatt 662
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 305 taaaagcctatttagtgaaattaataattgatattcgaactgatacagattagtttcatt 246
Query: 663 atatagcaactggtataagtacttaactgtaaatatatata 703
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 245 atatagcaactggtataagtacttaactgtatatatatata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no290_o13.g1 MSMg01no290_o13.g1 CHROMAT_FILE:
MSMg01no290_o13.g1 PHD_FILE: MSMg01no290_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:34 2005
(491 letters)
>mm_chr2_62790098_62790987
Length = 890
Score = 679 bits (351), Expect = 0.0
Identities = 436/491 (88%), Gaps = 42/491 (8%)
Strand = Plus / Plus
Query: 1 tttcactaaaagttaattcaaaacatggactctggtttgtctccacagttcaaaatattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttcactaaaagttaattcaaaacatggactctggtttgtctccacagtt-aaaatattt 259
Query: 61 cacagttaaaatatttctttcttccttcttttttgaaaagaaacttacttttgtatctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cacagttaaaatatttctttcttccttcttttttgaaaagaaacttacttttgtatctta 319
Query: 121 atgcacttctctctctctctctctctctctctctctctctctctctctctctctctctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgcacttctctctctctctctctctctctctctctctctctctctctct---------- 369
Query: 181 ctctctctctctctctctctctctctctctcttccccccctcaacttttagttcaacacc 240
|| ||||||||||||||||||| |||||
Sbjct: 370 -------------------------------tttcccccctcaacttttagttaaacact 398
Query: 241 tcagtaacagaggtcaatcatcattccactcagattaaacttctaaatcaaggtataaat 300
|||| ||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct: 399 tcagcaacagaggtcaatcagcattccactcagattaaacttctaaatcaaggcacaaat 458
Query: 301 gaccctgtaatgaccagaccattacttagtttgtatctaagtgccacattctttgataaa 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 459 gaccctgtaatgaccagaccattacttagtttgtatctaagtgtcacattctttgataaa 518
Query: 361 gtattttaactaggttaacttttttttggagtagtagtgttttatttgatggttgataat 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtattttaactagtttaacttttttttggagtagtagtgttttatttgatggttgataat 578
Query: 421 ccccgtaggtatctgcatgttaaatattgccctcagttatagcttgtcaaagttagaaat 480
|| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 579 ccttgtagttatctgcatgttaaatattgtcctcagttatagcttgtcaaagttagaaat 638
Query: 481 tttgaaacaca 491
|||||||||||
Sbjct: 639 tttgaaacaca 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
