AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCATGGCATTTTCTTTACTTTTAAAATGTCTGTTATTGTAGATACA
CTATTTTCCATTGAAGCATTAAGTCATGCACCTGGGATACTGGGTCAGTT
TTTCCATTAGCACACCAGTGAATCTAAAAGTCTTAATGTCCTTAGTGTGT
GTTCTTTCTGAATGATCGTTTGAGCTTCCATTTTCTGTTTCTATTTAAAA
TTACAGATCATCAAGTTATTGGATGGAAAGCGATCTCAAACTGTGGGAAT
CTTGATATCTAGTTTACATCTAGAAATGAAGGATATTCAACAGGGTAAGT
CTTTTTTTTCTCTTCCCTCCCGCTTGTAAATTCCCTATAGCTTCTCCAGG
CATGTTAACACCCTAAAACTACAGCTTCATCATGACATTTTCATACATGT
ACCATGTGGTTCTTCCACCTTATCTCTCCCCTGTTGCCTATGTCATCCCT
CCTCCATCCCCTGCCAATCTACTTCCTATTCTGTAACAGTGTTCCTTTGA
ACGTTTTTGAACATGCCCAAGAGTTAGAATGCTACAGTGAATCCCTGGTA
ACTAACACCCAGTTAGAATCCATTGTTACTTTTGTAACAGTGCAGTCCCT
CCTCCCAGTAGATTGTTATGAAAAAGATCTCTCACAGACATTTTATAATT
CATCATGTACAAACATTAGTATTACCAGGGTAAGGTGAAG

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAAAGCTTTTACTTTTTTTCTTTAT
TTCAACCATGACTATGTCATCATTAAATAGAGAGTTGTTGAGTTTTCATG
AGTATGTGGGCTTTCTGTTGTTGAAGTCCAGCCTCAATCCATGGTGATCT
GATAAAATGCAAGTGGTTATTCACTCTTGTATGTTTTGATGCTTGCCTTG
TGCCCACCTATATGGTCAGTTTTGGAGAACTTTCTGTGAGGTGCTGAGAA
AAAGGTATTTTCTTTTGTTTTGGGGTGAAAGGTTCTATAGATATAAGTTA
AATCTATTTGGTTCATAACCTGCTAATTTCATTGTTTCTCTGTTTAGTTT
CTGTTTTGCCCACCTGTCTAATAAAGTTGAAGTCTCCCACTACTATTGTG
TGGTTTTCAATGTGTGATTTGAGCTTCAGTAAAGTTTCTTTTAAAAATGT
GGGTGCCTTTGCATTTGGGCCATTGATGTCCAGAATTGAGACTTCATCTT
GGTGGATTTTTCCTTTGATGAGTATGAAGTGTCCTTCCCCATCTCTTTTG
ATTACTTTTGGTTGAAAGACTCTTTTGTTAGATATCACAATGGCTACTTG
AGCTTGTTTCTTGTTCAGCTTTCTTAGTAAACATTTTGCCTAGTCCTTGA
CGCTGAGGTAGCGTCTATCCTTGTTACTGAGGTGTGN

Query= MSMg01no291_c12.b1 MSMg01no291_c12.b1 CHROMAT_FILE:
MSMg01no291_c12.b1 PHD_FILE: MSMg01no291_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:52 2005
         (687 letters)



>mm_chr2_113403027_113404113
          Length = 1087

 Score = 1183 bits (612), Expect = 0.0
 Identities = 666/688 (96%), Gaps = 10/688 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatggcattttctttacttttaaaatgtctgttattgtagatacactatttt 64
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 205 gaattcctcatggcattttctttacttttaaaatatctgtaattgtagatacactatttt 264

                                                                       
Query: 65  ccattgaagcattaagtcatgcacctgggatactgggtcagtttttccattagcacacca 124
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ccattgaagcattaagtcatgcgcctgtgatactgggtcagtttttccattagcacacca 324

                                                                       
Query: 125 gtgaatctaaaagtcttaatgtccttagtgtgtgttctttctgaatgatcgtttgagctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgaatctaaaagtcttaatgtccttagtgtgtgttctttctgaatgatcgtttgagctt 384

                                                                       
Query: 185 ccattttctgtttctatttaaaattacagatcatcaagttattggatggaaagcgatctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccattttctgtttctatttaaaattacagatcatcaagttattggatggaaagcgatctc 444

                                                                       
Query: 245 aaactgtgggaatcttgatatctagtttacatctagaaatgaaggatattcaacagggta 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 aaactgtgggaatcttgatatctagtttacatctagaaatgaaagatattcaacagggta 504

                                                                       
Query: 305 agtcttt----tttttctcttccctcccgcttgtaaattccctatagcttctccaggcat 360
           |||||||    |    | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 agtctttcccat----cacttccctccagcttgtaaattccctatagcttctccaggcat 560

                                                                       
Query: 361 gttaacaccctaaaact-acagcttcatcatgacattttcatacatgtaccatgtggttc 419
           |||||||  |||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaacagtctaaga-tcacagcttcatcatgacattttcatacatgtaccatgtggttc 619

                                                                       
Query: 420 ttccaccttatctctcccctgttgcctatgtcatccctcctccatcccctgccaatctac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttccaccttatctctcccctgttgcctatgtcatccctcctccatcccctgccaatctac 679

                                                                       
Query: 480 ttcctattctgtaacagtgttcctttgaacgtttttgaacatgcccaagagttagaatgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcctattctgtaacagtgttcctttgaacgtttttgaacatgcccaagagttagaatgc 739

                                                                       
Query: 540 tacagtgaatccctggtaactaacacccagttagaatccattgttacttttgtaacagtg 599
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacagtgaatccctggtaactaatacccagttagaatccattgttacttttgtaacagtg 799

                                                                       
Query: 600 cagtccctcctcccagtagattgttatgaaaaagatctctcacagacattttataattca 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagtccctcctcccagtagattgttatgaaaaagatctctcacagacattttataattca 859

                                       
Query: 660 tcatgtacaaacattagtattaccaggg 687
           ||||||| ||||||||||||||||||||
Sbjct: 860 tcatgtaaaaacattagtattaccaggg 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)