BAC Information

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BAC

Clone NameMSMg01-291J06
Chromosome2 (Build37)
Map Location 7,332,572 - 7,332,861
singlet/doubletsinglet
Overlap geneLOC100040648
Upstream geneUsp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291J06.T7 (MSMg01no291_j06.b1)MSMg01-291J06.TJ (MSMg01no291_j06.g1)
ACCAG420538AG420539
length735735
length of high quality
(start - end)
315 (45 - 359)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no291_j06.b1 PHD_FILE: MSMg01no291_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:24 2005CHROMAT_FILE: MSMg01no291_j06.g1 PHD_FILE: MSMg01no291_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCTTGGAACTGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTTAGATCAAAAATTCAGGTGACAGCAG
ATACTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAATAAGCTCCTTCTGCCCCCCACCCCCCCCATGTTCCACTAT
GTTCATAGCAGCCTTATCCCCCACAACCAAAAGAAGGAAAGAACCCGGAT
GCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATTATGTACTCACTGATAAGTGGATATTAGCCCAATAC
CTATGATACCCAATATATTAGATACAATTTCCTATACACATGATACTCAA
GAAAAATGAATACTGTAGTTTGGACACTATGTCCC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGACACTTCCTTCAGCCTCCTAA
GCAGATATAGATGGTCACAATTAGCCAGAGACTATTAAAGTAAGTAGACT
TGTAGTAATGTATCCTCCTCATATATGAAAATATTTGCGATGCCTAATAA
GATAATAACATCAATTTTTATAAACTGCCCTGATATTTGTCATAAGAACA
TATGACATGTGACATAACTTTCACTTAAATATTTTCATTTTATAGTATTA
CTAGTTGGGGTAAATCAACTACAAAAATTTTGATTTGTAATTTGCTAAAA
ATATTCTTCCTTTTTNNCTGTTTTCCCCNTCTNCCCTAAGGAAATTGTTC
CATCATTTTGTTCAGTTCCCCCCTAAAAAAAAAAAAGAGATTCTGGATTG
CCGTAGCTTTCGTTATGTTGGTGAAAATGGACTTATGCTTTATAAATATT
ATTCTGAGTTTCCTTTGCCCCCCCTTTTTTGAAAATAGAGTTTTCCTCAC
CTAATAGATCCTGATTACAGTTACCCCTCCCTCTACTCTTCTCGGTTTCT
CTCTACTACCTTCTCATCTGGTTTCACCGCCTTCCTGTCTGATTTATAAT
AAACTAGCCTTCCATCCCCCTAACCTACTTGGATTCTAAGGGATGACTAA
ATTAGTAATATAATTCTCATCACATAATGTAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_j06.g1 MSMg01no291_j06.g1 CHROMAT_FILE:
MSMg01no291_j06.g1 PHD_FILE: MSMg01no291_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:24 2005
         (292 letters)



>mm_chr2_7332372_7333066
          Length = 695

 Score =  530 bits (274), Expect = e-155
 Identities = 285/290 (98%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacacttccttcagcctcctaagcagatatagatggtcacaattagccagagactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacacttccttcagcctcctaagcagatatagatggtcacaattagccagagactatt 260

                                                                       
Query: 61  aaagtaagtagacttgtagtaatgtatcctcctcatatatgaaaatatttgcgatgccta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtaagtagacgtgtagtaatgtatcctcctcatatatgaaaatatttgcgatgccta 320

                                                                       
Query: 121 ataagataat---aacatcaatttttataaactgccctgatatttgtcataagaacatat 177
           ||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ataagataataacaacatcaatttttataaactgccctggtatttgtcataagaacatat 380

                                                                       
Query: 178 gacatgtgacataactttcacttaaatattttcattttatagtattactagttggggtaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatgtgacataactttcacttaaatattttcattttatagtattactagttggggtaa 440

                                                             
Query: 238 atcaactacaaaaattttgatttgtaatttgctaaaaatattcttccttt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaactacaaaaattttgatttgtaatttgctaaaaatattcttccttt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 695
Length adjustment: 9
Effective length of query: 283
Effective length of database: 686
Effective search space:   194138
Effective search space used:   194138
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)