BAC Information

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BAC

Clone NameMSMg01-291J18
Chromosome2 (Build37)
Map Location 86,547,651 - 86,548,000
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1
Downstream geneOlfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291J18.T7 (MSMg01no291_j18.b1)MSMg01-291J18.TJ (MSMg01no291_j18.g1)
ACCAG420561AG420562
length738928
length of high quality
(start - end)		347 (384 - 730)---
definitionCHROMAT_FILE: MSMg01no291_j18.b1 PHD_FILE: MSMg01no291_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:26 2005CHROMAT_FILE: MSMg01no291_j18.g1 PHD_FILE: MSMg01no291_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTACATAACAAATAATTAAATTGTGTGCAGGTATTATTAATTTAT
TGTACAGAAAGTCTCATTCTTGCTAATTACTAAAGATAAGATGTTGATAG
GTGTGTATTTGTCTTAGAGTTCATTGCATTTTTATTTGCCCCTACCCCAG
AAGATAAACAAAAACAAAACAAGCAAATAAAACAATAAGTCTCTGATGTA
TTTGAATACTTCTAGACTATTAATATACATTAAAATAATGAAATACTAAT
TAAAAATAATTGCTGTTTCAACTGAGGAATGTTTTGTTTTCCTGTAGTTA
TTACATCAAATTATTTTTTCACCCCCCACCGACTATAACTATGACAGACA
CTTCCTTATATTCTACTGACAAATATATACTTCCTTTGAAATAGATATAT
ATATTATCAAAATAAAACACACACAAACATATACACACATGCAAATTACA
ACATATTTATTTATAAGAAGAATTAAATATTTAAGGGCTGAGAATATAGC
TTGTTTTATAGCATTATTGCCTGTAATAGGCCCTGCATTCAAGATCTAGT
ACTCCAGATCTAAACAAATTAATATATATTTTCTATTTTTATTGCTTCCC
AAGATCACTTGGTATAATACATAGGCCGAATTATAAATATACTTGATTTT
AATATATATTATATGCCATACAACTTACCAAGAATTCA

AAAAAAAAAATATAAATAAAAAACCCCCCTTTTAAAATGGAACCCNNNCT
CGAAAAAAAAAAGGGAGAGGGGGGGGGCCGGGTGTTTCAAACAAATTGGG
GGTAATAAAAAAAAAGGGGGGGGAAGTTTTTTTTTAATTTGAGGGGGGGG
GGTTTTATGGGGGGGAGGAAGAAATTTTTTTTTAGCCCCCCCAAAAAAGA
AAAAAACTTACGGTGGAAAGGGAAAAAAAAAAAAAAACACGTGCATTAGA
AAAGAAAGAGAGAAAAAAATTTTCAAAAAAAAAGGAGGGAGGGCTGTTGT
GGCCTTATTGAAAAAGGGAATAATTGACCATACACCATATCTAAAAATAT
TCTCTATAACGAGAATACGTAGCTACGTTTATAGAATAAAAAATATAGGA
GAGAGCCGAAAGAACACAGTTAACAAAGTAGGAAAAATTTTTATTTTCGT
TGAATACCAAGATATACAAGAAAAAAAAAAAAAAAAAATTAAAAATGCGA
ATTTGAAGGAAACGACCCCCCGCCCCCCCAAAAACTAAAATAATAGTTAA
AAGAATTAATATTGTGGGTGCCTTGGGGCATGTAAAAAAAAAAAAAAAAA
AAAAAAAATTTTAGGGGGGGGGGGGTTGTTTTATATAATAAATAAACTTT
TAGTTGAAAAAGAAGATTAATTAACATTAAAGAAGGGACGTTATTGCTCC
ATACAAAAAAAAAAAGTTATGGTATAGGTTGGGGTACTATATATAAAAGA
ATAAAATCAAAGTATAGAAGATATGAAGAAGGAAATAAGAGGAATTACAC
TAACATAAATTGAAAGCGATATACATATTGATTTAAACATGGGGATTGGA
GGTATGTTTAAATATTGTTATAACCTCTATTATAATAAAGAATTAAAATG
AAACAAGATTGTACTATAATATGTCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_j18.b1 MSMg01no291_j18.b1 CHROMAT_FILE:
MSMg01no291_j18.b1 PHD_FILE: MSMg01no291_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:26 2005
         (347 letters)



>mm_chr2_86547451_86548200
          Length = 750

 Score =  592 bits (306), Expect = e-173
 Identities = 338/350 (96%), Gaps = 3/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataactatgacagacacttccttatattctactgacaaatat---atacttcctttgaa 57
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 201 tataactatgacagacacttccttatattctactgacaaatatatgatacttcctttgaa 260

                                                                       
Query: 58  atagatatatatattatcaaaataaaacacacacaaacatatacacacatgcaaattaca 117
           |||||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atagatgtatgtattagcaaaataaaacacacacaaacatatacacacatgcatattaca 320

                                                                       
Query: 118 acatatttatttataagaagaattaaatatttaagggctgagaatatagcttgttttata 177
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||
Sbjct: 321 acatatttatttataagaagaattaaatatttaagggctgagaatttagcttggcttata 380

                                                                       
Query: 178 gcattattgcctgtaataggccctgcattcaagatctagtactccagatctaaacaaatt 237
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattattgccagtaataggccctgcattcaagatctagtactccagatctaaacaaatt 440

                                                                       
Query: 238 aatatatattttctatttttattgcttcccaagatcacttggtataatacataggccgaa 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 aatatatattttctatttttattgcttcccaagatcacttggtataatacataggctgaa 500

                                                             
Query: 298 ttataaatatacttgattttaatatatattatatgccatacaacttacca 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttataaatatacttgattttaatatatattatatgccatacaacttacca 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 750
Length adjustment: 9
Effective length of query: 338
Effective length of database: 741
Effective search space:   250458
Effective search space used:   250458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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