BAC Information

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BAC

Clone NameMSMg01-291L24
Chromosome2 (Build37)
Map Location 7,741,945 - 7,742,259
singlet/doubletsinglet
Overlap genenone
Upstream geneCugbp2, LOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291L24.T7 (MSMg01no291_l24.b1)MSMg01-291L24.TJ (MSMg01no291_l24.g1)
ACCAG420661AG420662
length746730
length of high quality
(start - end)
323 (45 - 367)184 (121 - 304)
definitionCHROMAT_FILE: MSMg01no291_l24.b1 PHD_FILE: MSMg01no291_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:37 2005CHROMAT_FILE: MSMg01no291_l24.g1 PHD_FILE: MSMg01no291_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTAATCACACAATACTCTCAAAGTACCAAACATTTTGACCAATA
TTCCATTTTTCAGAGTGAGGATGGATCAGAGGATTTTGACATAATCAAGT
GATGGAATGTTTTAAAATGGCTCACCTTATGGTAGCATCCTTGGGTGTTT
ATGCTTGATCTCTGCCTTTTGCTTCATGTGCCCTTCCCTCTATCTTTATC
ACCAGTATCATTAAACAACATGTGGAGATTTGGGCTCTCTGATTAGACTG
GAAAGCATGGGTTAATTCAGCACTCATAGTTACTTTAGTTTGAACAAGAA
TTGTCCACTTTTATTATTTTTTGTTCCCCCCACCCCCAAGTAGACAAAGT
TTATTTTAAACTTTTAAAACTCCCGGCTAACTTATTGAACCTGATACATT
TCATTTGAATTTTTAGTATTGATTTTCATCTGGAAAACTAGTATTCTTTT
TTTTTCCTTTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTAT
CCCAAAAGTCCCCCATACCCATCCCCCCACTCCCTTACCCACCCACTCCC
CTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGT
CCAATGGGCTTCTCTTTCAAGTGATGGCCTATTACGCCATCTTTTGATAC
ATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATAT
GGAGGACGCCTGGCCTTCGGGAGGCGNNGAACNANAGAAGGATCTGCCAA
AATCAGCGCANANGACTCCATTTTTGAATCATGTTCTTACAGATTATGAT
TTATTTCTCAAATTTTAGAAATTGCCTAAAGATACTATACATCTTTTAAG
CCAGGATATTATATTCTCTAGCAAATAAAAATATTCTTCTTCAAGTAAAT
TCATTTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCT
GTCCCCCTCCTCTCCCTTTATGGGTATGTGTGTATGTGTGTAACTGAACA
ATAGTTATATTTTTAACCNACAGCNATAACCAGCGCTACGCCTGTATGTT
TTGCGCCACCTCACTCGGCTTTTAAAATTTTTTTTTATTTTATACTCATA
ACCGCGTGAATAAACAAATAAAAATATTTGAGTGAGGTTATAATGGCTGG
CAGTGAGTAATTGTATTTAGTAATTCCAATAGGTTTAGTTTTCAATACTT
GAGAGGATTTTCTTATAACTCAATTATTACTGCAATTTTTCTTTCCAATA
CGTTCTAAAAGGCTCATTTGCACTGGCGAATATCATTTAAGTAATGTGGA
ATATGGACTTACCCACAAAACTTCATTAAAACGATAAGACGTATTTTTTT
TTTTTTATGAATTGCCTAATTCAAAGCTTTTCTTTTTCCAGGGGTTCATG
GAACTTTGTCTTGGAAGAGCATAAAACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_l24.b1 MSMg01no291_l24.b1 CHROMAT_FILE:
MSMg01no291_l24.b1 PHD_FILE: MSMg01no291_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:37 2005
         (323 letters)



>mm_chr2_7741741_7742463
          Length = 723

 Score =  480 bits (248), Expect = e-140
 Identities = 299/316 (94%), Gaps = 2/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttaatcacacaatactctcaaagtaccaaacattttgaccaatattccattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttaatcacacaatactctcaaagtaccaaacattttgaccaatattccattt 264

                                                                       
Query: 65  ttcagagt-gaggatggatcagaggattttgacataatcaagtgatggaatgttttaaaa 123
           |||||||| | |||||| |||||||  |||||||||||||||||||| ||||||||||||
Sbjct: 265 ttcagagttg-ggatgggtcagagggctttgacataatcaagtgatgtaatgttttaaaa 323

                                                                       
Query: 124 tggctcaccttatggtagcatccttgggtgtttatgcttgatctctgccttttgcttcat 183
           ||||| ||||||||| ||||||||||| ||||| ||||||||||||  ||||||||||||
Sbjct: 324 tggctaaccttatggaagcatccttggatgtttttgcttgatctctatcttttgcttcat 383

                                                                       
Query: 184 gtgcccttccctctatctttatcaccagtatcattaaacaacatgtggagatttgggctc 243
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 gtgcccttccctctatctttatcaccagtatcattaaagaacatgtggagatttgggctc 443

                                                                       
Query: 244 tctgattagactggaaagcatgggttaattcagcactcatagttactttagtttgaacaa 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 444 tctgattagactggaaagcatgggttaattcagcactcagagttactttagttagaacaa 503

                           
Query: 304 gaattgtccactttta 319
           || || ||||||||||
Sbjct: 504 gatttctccactttta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)