TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACTTATGCCTCCTTACCTGAGATTAAGTGACTACTGTGTATCTT
GGGATTATTTTCACTGTCAGAACTCATTTTCCTCTTATAGTGAAGTCTTG
AGATACTTCCTTAGGAAACAGTCCCATCACACCCTTCCAGGTGCTGCAGA
CACCTTCACACATCCTTGGATTGGCATGCAATATCAGTATTATATACATT
GATGCTTGGCCTCAGGTTGGCATGCCATGGTAACTCTACACCTGCCACGG
TAGCCGAATGGCACCCTGAATGCTGCTGCTTTTGAAACAGTGTACTCTTG
AGACTGGCTGTGTTCTTCAGCTGGGCCCAGTCAGTGGTTTCAGCAAGAAC
ACCCCCAGGGAGTGCACCCCTAGAGTAAGAACACAAGACAAAGACTGTAG
ATGTTCCCTAAATTACTTTCTCCTTTTCTTGGGAAGATTGTTGGACCACA
TTTTCTAGCCTCTATTTGGGATAACTGCCTCATTTAATCTTAGTATTTAC
TCAGGATGATGGAGCCACTTCCAAGCTTGGACAATAGAAAACATCCCAAG
CCCTCTCTTATGCCCCTCTTCCTTTCCATCTAGACATAGATGTCACTTGA
TGATGATAGTGTCTCTCTAGTTCTGGAACATTAGATAAATGCTGTTCAGC
ATAGCCACTTGTCATATGTCTACCAGCCTGATATTACAAACAAGGATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTACTAACCAGACTAAGAACC
CCAAGGTTCAGGCACAGTCTTTTCCCGCGACTTAATCAGTGTTCTGTTGC
TGTGAAGAGACACCAGGACCATGGCAACTCTTAAAATAGAAAGTATTTAA
TTGGGGCTTATTTACAGTTTTGGAGGTTTAGTTCATTATCCTTGTGGTAG
GGAACATGGTAGCATGCAGGTAGACATGGTAGCTGAGTGTGTGTGTATGT
GTTTGTGTGTGTGTGTGTATGTGTGTGTATGCATGTATGCATGTATGTAT
GTATGTATGTTTTTAGTANATATGCCCCCCCCCCCCGTCTTTATATCCTC
AGTTGTATAGGAATCCCCCCCCCCGAAAATAAATAAAAAAACTCTAGTGG
GGTGCGTTGACGATCTCTTAACTATATTTAAATGTCTAGGCTACAGTTTA
TATTTATAGTTTTCTTTCTAAGTGTCTTTTCACCGCGATCCTAATTTCAC
TTTTATTGGTTATTTCAGATTCAACCTTTTTGCATTCCTATATCATATGA
CATCTCTCTGATATTTGTATATACTGTTATTTTTGGGTGTACTGCCCCGC
TGACGTCTTTCCTGTCTTATCACTTGCCTTGTCCCTGCTGCTTGTCTGTC
ATTTGTCCTTAGCTCTCTCCTCTTTCTATAACTTCTTTTGTCTACTTTAT
TTCCGTT

Query= MSMg01no291_n15.b1 MSMg01no291_n15.b1 CHROMAT_FILE:
MSMg01no291_n15.b1 PHD_FILE: MSMg01no291_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:45 2005
         (702 letters)



>mm_chr2_44478842_44479943
          Length = 1102

 Score = 1189 bits (615), Expect = 0.0
 Identities = 678/699 (96%), Gaps = 2/699 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacttatgcctccttacctgagattaagtgactactgtgtatcttgggattat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattcttacttatgcttccttacctgagattaagtgactactgtgtatcttgggattat 843

                                                                       
Query: 65  tttcactgtcagaactcattttcctcttatagtgaagtcttgagatacttccttaggaaa 124
           |||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 842 tttcaccgccagaagtcatcttcctcttatagtgaagtcttgagatacttccttaggaat 783

                                                                       
Query: 125 cagtcccatcacacccttccaggtgctgcagacaccttcacacatccttggattggcatg 184
           ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 782 cag-cccatcacagccttccaggtgctgtagacaccttcacacatccttggattggcgtg 724

                                                                       
Query: 185 caatatcagtattatatacattgatgcttggcctcaggttggcatgccatggtaactcta 244
           | |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cgatatcagtgttatatacactgatgcttggcctcaggttggcatgccatggtaactcta 664

                                                                       
Query: 245 cacctgccacggtagccgaatggcaccctgaatgctgctgcttttgaaacagtgtactct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cacctgccacggtagccgaatggcaccctgaatgctgctgcttttgaaacagtgtactct 604

                                                                       
Query: 305 tgagactggctgtgttcttcagctgggcccagtcagtggtttcagcaagaacacccccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgagactggctgtgttcttcagctgggcccagtcagtggtttcagcaagaacacccccag 544

                                                                       
Query: 365 ggagtgcacccctagagtaagaacacaagac-aaagactgtagatgttccctaaattact 423
           |||||| |  ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 543 ggagtggagtcctagagtaagaacacaagacaaaagactgtagatggtccctaaattact 484

                                                                       
Query: 424 ttctccttttcttgggaagattgttggaccacattttctagcctctatttgggataactg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttctccttttcttgggaagattgttggaccacattttctagcctctatttgggataactg 424

                                                                       
Query: 484 cctcatttaatcttagtatttactcaggatgatggagccacttccaagcttggacaatag 543
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctcatttaatcttagcatttactcaggatgatggagccacttccaagcttggacaatag 364

                                                                       
Query: 544 aaaacatcccaagccctctcttatgcccctcttcctttccatctagacatagatgtcact 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaaacatcccaagccctctcttatgcccctcttcctttccatctagacatagatgtcact 304

                                                                       
Query: 604 tgatgatgatagtgtctctctagttctggaacattagataaatgctgttcagcatagcca 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 303 tgatgatgatagtgtctctctagttctggaacattagataaatgctgttcagcaaagcca 244

                                                  
Query: 664 cttgtcatatgtctaccagcctgatattacaaacaagga 702
           ||||||| |||||||||||||||||||||||||||||||
Sbjct: 243 cttgtcaaatgtctaccagcctgatattacaaacaagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)