BAC Information

Click to search

BAC

Clone NameMSMg01-291P18
Chromosome2 (Build37)
Map Location 59,842,756 - 59,843,056
singlet/doubletsinglet
Overlap geneBaz2b
Upstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1
Downstream geneLOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P18.T7 (MSMg01no291_p18.b1)MSMg01-291P18.TJ (MSMg01no291_p18.g1)
ACCAG420832AG420833
length732733
length of high quality
(start - end)
313 (46 - 358)299 (435 - 733)
definitionCHROMAT_FILE: MSMg01no291_p18.b1 PHD_FILE: MSMg01no291_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005CHROMAT_FILE: MSMg01no291_p18.g1 PHD_FILE: MSMg01no291_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATACTTGCATATATGACCGCTCTTCCAGTTTCCCTCCAGCTCCC
TGCATCCCTGTCAGTGTCGTGCCATCGAAACTTCATGGTTTGTTTTTACT
AACCTACTAAGCACAGTTAGTGCTGTGTGTGGGTGTGGGGCTCTCTGTGG
AGCAAGGGACCCTACCACTGTAAACACCTTCTGGAAGATTCTCTCTCCCT
TGGCTGCTGTCACCTGCCAGGAGAGGGTAACTTGGAATCTGAAGCTCAAT
ACTCATTTAGGTTACTGTTTTGTTGGTGATGTGGCTCACAAACCTAAGCA
TCTCCAGTCCTCTTTTTTATTCCCCCCACCCCACACAAGAATAGGCCAGG
AGGGCCAAAGTAGGGCTGACTACTACTGAGACAAGACTATCCTGTTCAGT
GAGCAGCCAGCGTGTGAGGAGAGACAGCATTACAGTTGCTGTTCTGATTT
AGTTTGGGGTTCATTCAGGTCGGCGTCAGGACAGTCCCAAGGTCCCCAGA
GGACTCTCCTCACCACAGGCGCCCTAGCACACCTAGGATCTTGGGATCAC
TTATGAGTGGAACACAACATCTGTTCCAAAACAACCCAGAGGGACTTGTG
CCAGCAGGAGAGAGAGAGAGATGCTTTAATGGTGACTTTTAAATTAAAAT
GTTAGAAATAACAATTTCTCTTTAGACTGCAA
TCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATGGGTTCTTTGATAGCATC
CTGCTGTTTCAAACGTTATCCTACAGTTTATTTCTTTGTCATCTTAGTCA
CTGGTGGTGCTTATACAAATTCCTTTATGCGCTAAAGGCTGTACATTGAG
TTTGCTTTCAGACACTAAGCAAATAGCTATTTTCTGTTGAATCGATCCCT
TCCCTAGCTCTGAAGTTACACTCACTCATAGCTGAGGCTATTGCTATGAT
GAATCCCGACAGAGCAGGTGATATCCTGGATCAGAGGCACAGTACGGGAC
AGGAGCACTTTTGGTANTTCTCNNNNTCGTNACATCAGCTCTGTGGCTCG
GTGATGATGGAGCGGCCCCGTAAGACAAAAAAACACCGTGCTTGAGAACA
CCAAGCACGTGAGTCAGATAGATCCTCTTTAAGGATATGCAGGGGGTTTT
GTTCTGATCTTTTAAATCACCTAAATTTGTTCATTTTAAGTCCAGTCCTG
AAAAGTAGCTCAGGTCAAGAGAGCCAAGGCCTTGCCTTCCTGGGACTTGG
ATCGATAACATTTTGAGGTGTTTAAAACCAGGAGAACCTTTACTTTGATT
GCCATAACTGGGATAAAAAATTTTGCCATGAGAACAGTTAGGGCTATTGA
CATATGTGGATTTTATTGGTTTTATGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p18.g1 MSMg01no291_p18.g1 CHROMAT_FILE:
MSMg01no291_p18.g1 PHD_FILE: MSMg01no291_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:54 2005
         (299 letters)



>mm_chr2_59842556_59843256
          Length = 701

 Score =  520 bits (269), Expect = e-152
 Identities = 294/303 (97%), Gaps = 6/303 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgtgcttgagaacaccaagcacgtgagtcagatagatcctctttaaggatatgcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accgtgcttgagaacaccaagcacgtgagtcagatagatcctctttaaggatatgcaggg 442

                                                                       
Query: 61  ggttttgttctgatcttttaaatcacctaaatttgttcattttaagtccagtcctgaaaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ggttttgttctgatcttttaaatcacctaaacttgttcattttaagtccagtcctgaaaa 382

                                                                       
Query: 121 gtagctcaggtcaagagagccaaggccttgccttcctgggacttggatcgataacatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagctcaggtcaagagagccaaggccttgccttcctgggacttggatcgataacatttt 322

                                                                       
Query: 181 gaggtgtttaaaaccag-gagaacctttactttgattgccataactgggataaaaa--at 237
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 gaggtgtttaaaaccagtg-gaacctttactttgattgccataactgggataaaaagtat 263

                                                                       
Query: 238 -tttgccatgagaacagttagggctattgacatatgtggattttattggttttatgaaaa 296
             ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 262 cattg-catgagaacagttagggctattgacatatgtggcttttattggttttatgaaaa 204

              
Query: 297 aaa 299
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 701
Length adjustment: 9
Effective length of query: 290
Effective length of database: 692
Effective search space:   200680
Effective search space used:   200680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)