BAC Information

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BAC

Clone NameMSMg01-292D02
Chromosome2 (Build37)
Map Location 140,156,330 - 140,330,165
singlet/doubletdoublet
Overlap geneSel1l2, 2900006F19Rik
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik
Downstream geneFlrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292D02.T7 (MSMg01no292_d02.b1)MSMg01-292D02.TJ (MSMg01no292_d02.g1)
ACCAG420981AG420982
length761764
length of high quality
(start - end)
668 (45 - 712)549 (77 - 625)
definitionCHROMAT_FILE: MSMg01no292_d02.b1 PHD_FILE: MSMg01no292_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:11 2005CHROMAT_FILE: MSMg01no292_d02.g1 PHD_FILE: MSMg01no292_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,329,501 - 140,330,165)(140,156,330 - 140,156,878)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGAACTATATTCTTCAACAACAACAAAATGAACACCTCTCTTTA
TTAGTCCTTCACAGGTCCTACCTTCCAGATACAAATCTCTATTTCTAGTG
GAAGGTAACATGAAAACTATACACATTTACAATAAATCTTTCAGAAGCCC
AAACTTTCCATGAGAATTCTAACAGAGAATTTAAATTTAAGAAAGTACAA
TGGAAATATTGTATGTAGTTTTCAATTACAAATTTAGTAAATATTAAATA
TTGAAAAGATTAATTTTGAAAATGTAAAAAGGAGTTAAACTTCACCCTGG
ATTTCTAAGTATTCCTGTTATCAAACTCTGTTACCTGGGAATCTATTGCT
AAGAAAACATTAGAAACTGGAATGTCTAAAATTCTCTAGTAAACATTTTT
AACCTACTATTAATAATTGCACATAGAGTAAACACAAGTAAACAAGTCAA
TTTTTCCTCAAAGATTTACTTTTGACATCTATGAGAAATGAACACATAAT
TAAATTAACAGTGTTTCTGAACACCAACTCTGCAGTGGGTCATCAACAAA
AACTAAGCATGACATCAACTAACGTTTACTTGTATCTAACACAATGTGGA
AGGAAACCATGGAAAGCTGGAGAACACTACAGCCAGGAGACAAGGCAAAG
ACTCAAGACAAACTGTAATTATCTTTAGTGAAAATAAAGCTGTAGAAACT
GAGCTGCAAGC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACTTGAGGCTGAAATTCAGAGG
AGACTGGTTTTCTAATTTATTCCCAGCGAGTGCACAGAGGATGAAACAGT
GTTTCATCATATTTGAGGTTTTACAAAGGGATGTGATGGAATCCTCAATG
CCAAGAATGCTACTTTGTTTAAAATGAAGTTTAAAATAGCAAGAGTATGT
TTATATCGTTTCATACACTTTGGAATGCTCTATTGATTCCAAGCCAAAAT
TCACCACATTATTTTTTCAAATTAAACTCAATCAATAGCCTAAATAGCAA
TTATTAGCATAAAACATTTAGATACAATATGATGCAAATATATACTAACC
TTATTAAACATTATGAAACGATGGCTGGAAAATAGTCAGCATTTTTTTCC
GTAATTCAATTATATGTTCCTATAAAAGCAGAAGCTTTGTATACTGAGTT
AGAACACTGCACTGAAGTTCATCATTCACATTAGGTCTGAGTCTGAGCCA
TAGTGTTTCAGAGCATGACTGGTTGGCAATGCATGGCGTGTGAGGTACAG
AGTGGGCTTGTGATGTGTTCAGAACCAAGTTGTATTGAGGTTGTGCAATG
AGATATGTGTGAGTGCTGGCAGATACTCTGCAGATTCCTTGTGTTGTTGA
TTCCGAAATAACCCTGATGGCTCTGTGTTTCCGACACGTTTTTTTCATTG
CCATAGTTTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_d02.b1 MSMg01no292_d02.b1 CHROMAT_FILE:
MSMg01no292_d02.b1 PHD_FILE: MSMg01no292_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:11 2005
         (668 letters)



>mm_chr2_140329298_140330365
          Length = 1068

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagaactatattcttcaacaacaacaaaatgaacacctctctttattagtcc 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 868 ggaattcatagaactatattcttcaacaacaacaaaatgaacatctctctttattagtcc 809

                                                                       
Query: 64  ttcacaggtcctaccttccagatacaaatctctatttctagtggaaggtaacatgaaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttcacaggtcctaccttccagatacaaatctctatttctagtggaaggtaacatgaaaac 749

                                                                       
Query: 124 tatacacatttacaataaatctttcagaagcccaaactttccatgagaattctaacagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tatacacatttacaataaatctttcagaagcccaaactttccatgagaattctaacagag 689

                                                                       
Query: 184 aatttaaatttaagaaagtacaatggaaatattgtatgtagttttcaattacaaatttag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aatttaaatttaagaaagtacaatggaaatattgtatgtagttttcaattacaaatttag 629

                                                                       
Query: 244 taaatattaaatattgaaaagattaattttgaaaatgtaaaaaggagttaaacttcaccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taaatattaaatattgaaaagattaattttgaaaatgtaaaaaggagttaaacttcaccc 569

                                                                       
Query: 304 tggatttctaagtattcctgttatcaaactctgttacctgggaatctattgctaagaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggatttctaagtattcctgttatcaaactctgttacctgggaatctattgctaagaaaa 509

                                                                       
Query: 364 cattagaaactggaatgtctaaaattctctagtaaacatttttaacctactattaataat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cattagaaactggaatgtctaaaattctctagtaaacatttttaacctactattaataat 449

                                                                       
Query: 424 tgcacatagagtaaacacaagtaaacaagtcaatttttcctcaaagatttacttttgaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgcacatagagtaaacacaagtaaacaagtcaatttttcctcaaagatttacttttgaca 389

                                                                       
Query: 484 tctatgagaaatgaacacataattaaattaacagtgtttctgaacaccaactctgcagtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 388 tctatgagaaatgaacacataattaaattaacagtgtttctgaacaccaactctgaagtg 329

                                                                       
Query: 544 ggtcatcaacaaaaactaagcatgacatcaactaacgtttacttgtatctaacacaatgt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggtcatcaacaaaaactaagcatgacatcaactaacgtttacttgtatctaacacaatgt 269

                                                                       
Query: 604 ggaaggaaaccatggaaagctggagaacactacagccaggagacaaggcaaagactcaag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggaaggaaaccatggaaagctggagaacactacagccaggagacaaggcaaagactcaag 209

                
Query: 664 acaaa 668
           |||||
Sbjct: 208 acaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no292_d02.g1 MSMg01no292_d02.g1 CHROMAT_FILE:
MSMg01no292_d02.g1 PHD_FILE: MSMg01no292_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:11 2005
         (549 letters)



>mm_chr2_140156130_140157078
          Length = 949

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacttgaggctgaaattcagaggagactggttttctaatttattcccagcgagtgcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctacttgaggctgaaattcagaggagactggttttctaatttattcccagcgagagcaca 260

                                                                       
Query: 61  gaggatgaaacagtgtttcatcatatttgaggttttacaaagggatgtgatggaatcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggatgaaacagtgtttcatcatatttgaggttttacaaagggatgtgatggaatcctc 320

                                                                       
Query: 121 aatgccaagaatgctactttgtttaaaatgaagtttaaaatagcaagagtatgtttatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgccaagaatgctactttgtttaaaatgaagtttaaaatagcaagagtatgtttatat 380

                                                                       
Query: 181 cgtttcatacactttggaatgctctattgattccaagccaaaattcaccacattattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtttcatacactttggaatgctctattgattccaagccaaaattcaccacattattttt 440

                                                                       
Query: 241 tcaaattaaactcaatcaatagcctaaatagcaattattagcataaaacatttagataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaattaaactcaatcaatagcctaaatagcaattattagcataaaacatttagataca 500

                                                                       
Query: 301 atatgatgcaaatatatactaaccttattaaacattatgaaacgatggctggaaaatagt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 atatgatgcaaatatatactaaccttattaaacattatgaaatgatggctggaaaatagt 560

                                                                       
Query: 361 cagcatttttttccgtaattcaattatatgttcctataaaagcagaagctttgtatactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcatttttttccgtaattcaattatatgttcctataaaagcagaagctttgtatactg 620

                                                                       
Query: 421 agttagaacactgcactgaagttcatcattcacattaggtctgagtctgagccatagtgt 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcagaacactgcactgaagttcatcattcacattaggtctgagtctgagccatagtgt 680

                                                                       
Query: 481 ttcagagcatgactggttggcaatgcatggcgtgtgaggtacagagtgggcttgtgatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcagagcatgactggttggcaatgcatggcgtgtgaggtacagagtgggcttgtgatgt 740

                    
Query: 541 gttcagaac 549
           |||||||||
Sbjct: 741 gttcagaac 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)