BAC Information

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BAC

Clone NameMSMg01-292F12
Chromosome2 (Build37)
Map Location 145,425,597 - 145,425,853
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream geneDtd1, 1700010M22Rik, LOC627312, OTTMUSG00000015643
Downstream geneLOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292F12.T7 (MSMg01no292_f12.b1)MSMg01-292F12.TJ (MSMg01no292_f12.g1)
ACCAG421090AG421091
length766858
length of high quality
(start - end)
257 (422 - 678)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no292_f12.b1 PHD_FILE: MSMg01no292_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:23 2005CHROMAT_FILE: MSMg01no292_f12.g1 PHD_FILE: MSMg01no292_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGCATAACTTCCATCCTAAGTTCTAAATTGAAGTCTCTGCTCT
TTGGGCCGTCTCTCTCTGCAATCAGAGACTCTAATCATTGGGTTTTTATA
AAATCTGATTTATAAAATTGCATGCTTCACAATAAAATAGCTTCAGGGTG
CAAGCACAAAATTTAAAACATTCAATTAAAAATATAAAACAGAGCCACAG
CCATAAAAAGAAAAAAAAAAAACCACACAGCATACATTAGACTCTTCAGC
TGCCTCCTGGGATCTAGATAGCTTTAAAATAACTTTAAACATTTTGTCTG
AAAATCCAAAATTTATTTTGGACTTGCCCCATAGGTAGAAACCTTCCAGG
CTGTGTGACACACCCCCCCTTGGCAAAAACTTGCATCTATTCATCCTGGC
CACTTCTCTGGGATGAAGTTTGTGGATGCGGTGATCTGGTCTTGTGGGTA
AGAGTTAAGCACTTCCCATTCAGCCTGAGAAGTAGCTCTCACCCAGCCCC
TGAGTAGCCTTGGAAATGTGGCTAAATTACTCAGCCATTTTAAATCTCGG
CCTCCTTCTCTGCAAAATAATAATAATACTTCCTGTTTTCAAAGGTTTTT
ATCAGGGCGGAATGGAATCAGTTAGTTATCAGTATAATACCTGGTTTCAA
AAAAGCCATCATTGACCAGAACATTTTTTTTAAAGTCTTCATTGTATAGC
ACTTTTCACCTGTTAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTATGAATTCACTAGACCGGAATTGA
ACATGGTCTGTCTGCCTCACCCTCCCAAGGACTAGAATTGTACGTATGTG
CACGTATGTGCACTTGATACATTCTTCATTTACTCTGCTGACCACACTCC
ACCCCAGAAGACACATATAGGCCTACGTGGAACTGTCAAGCCCTGAACTC
AACAAAGATTGACTGGATGCTGACTTGGAAGTGACTGGATGTCACCTTAG
TCTGTAGGACTGGAATATTGTGCTCCTCTCTGGCTCCCCTCTGCTGCATT
GCCTATTTTTTTTTTATCCCCCCCCCCCCCCCTCTGCACACTGCACCTCT
GTTTTTTTCTTCCATTCTCTTTTTTAAAAAAAAAAAATAGTTCTCTTCTC
GGACCTACTTTATGAATATACACGCTCTCTCTCCTACTAGATTGTTATTA
CTCTCACCCAGCGTCCCTTTTCTTCATCACTCCTAATTTTTTATTATCCC
TCTCTTCCTATCACACATGTATACTATTTTCTAAACTTAAATTTTTTTCC
ACTTTCCTCTCTCATGTTTTTCTCCCCACTTCTTTTTTTTCCCCCCCCCT
CATTCAACTTCTTCAACTTTACCACTTCTCAATCTCTCTCTCCTCTTTTC
CTTCTCCATTTTTCCCAATTTCTCACATCACCTTTTATTCCCTCTTTTAC
ACACTTTTCTCTTTCGTCATTAACATATCTCCATCATAATCTTATTACAC
ATTCCTATATCATTCCCCTTCTTTCCCTTTACCCTCACTCTTCTACTCCT
CTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_f12.b1 MSMg01no292_f12.b1 CHROMAT_FILE:
MSMg01no292_f12.b1 PHD_FILE: MSMg01no292_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:23 2005
         (257 letters)



>mm_chr2_145425397_145426053
          Length = 657

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaaaaacttgcatctattcatcctggccacttctctgggatgaagtttgtggatgcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaaaaacttgcatctattcatcctggccacttctctgggatgaagtttgtggatgcgg 260

                                                                       
Query: 61  tgatctggtcttgtgggtaagagttaagcacttcccattcagcctgagaagtagctctca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tgatctggtcttgtgggtaagagttaaacacttcccattcagcctgagaagtagctctca 320

                                                                       
Query: 121 cccagcccctgagtagccttggaaatgtggctaaattactcagccattttaaatctcggc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 cccagcccctgagtagccttggaaatgtggctaaattacttagccattttaaatctcggc 380

                                                                       
Query: 181 ctccttctctgcaaaataataataatacttcctgttttcaaaggtttttatcagggcgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccttctctgcaaaataataataatacttcctgttttcaaaggtttttatcagggcgga 440

                            
Query: 241 atggaatcagttagtta 257
           |||||||||||||||||
Sbjct: 441 atggaatcagttagtta 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)