Query= MSMg01no293_a13.b1 MSMg01no293_a13.b1 CHROMAT_FILE:
MSMg01no293_a13.b1 PHD_FILE: MSMg01no293_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:17 2005
(697 letters)
>mm_chr2_26166932_26168028
Length = 1097
Score = 913 bits (472), Expect = 0.0
Identities = 508/520 (97%)
Strand = Plus / Minus
Query: 178 ttgttttggtttttttgttttgttttgtttttttgtcttttttgtttttgttgttttttc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 ttgttttggtttttttgttttgttttgtttttttgtcttttttgtttttgttgttttttt 1038
Query: 238 gagacagggtttctctgtgcagccctggctgtcctggaactcactctgtagaccaggctg 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1037 gagacagggtttctctgtgcagccctggctgtcctggaattcactctgtagaccaggctg 978
Query: 298 gccttgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgtg 357
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 977 gccttgaactcagaaatctggctgcctctgcctcccaagtgctgggattaaaggtgtgtg 918
Query: 358 ccatcactgcccagcaacccgcttcttaaatgtaagcgtgagctcctttctgctgtcctg 417
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 917 ccatcactgcccagcaacttgcttcttaaatgtaggcgtgagctcctttctgctgtcctg 858
Query: 418 atcaaacacaccctcctgtgacagaatcatccactgctgttcccttgggagcttcaaaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atcaaacacaccctcctgtgacagaatcatccactgctgttcccttgggagcttcaaaac 798
Query: 478 attggtgaatatagtagcaagtagatagttggatctatgtcacatccccataggagccaa 537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 797 attggtgaatatagtagcaagtagatagatggatctatgtcacatccccataggagccaa 738
Query: 538 gatggaaacagtctgtcccacccacgagagcctcaggaagatgacatacgcacacagaca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gatggaaacagtctgtcccacccacgagagcctcaggaagatgacatacgcacacagaca 678
Query: 598 cacacaggaaaatagctctaagtccacgtgagatggaatgcactgtcagcatgaggcact 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cacacaggaaaatagctctaagtccacgtgagatggaatgcactgtcagcatgaggcact 618
Query: 658 gacagcgcaacatttctgaggcacactaactggctgttgc 697
||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 617 gacagcgcagcattcctgaggcacactcactggctgttgc 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_a13.g1 MSMg01no293_a13.g1 CHROMAT_FILE:
MSMg01no293_a13.g1 PHD_FILE: MSMg01no293_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:17 2005
(288 letters)
>mm_chr2_26002522_26003209
Length = 688
Score = 474 bits (245), Expect = e-138
Identities = 278/293 (94%), Gaps = 8/293 (2%)
Strand = Plus / Plus
Query: 1 ctgtgaacgcaccctaagtggggccaggcagggccccaaactgaggcagtagccctgtgg 60
||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 201 ctgtgaatgcaccctaagtggggccaggcagggccccaaaccgaggcagtaaccctgtgg 260
Query: 61 ccatggggaccatggagaacagcatgatatatatctaattgcttgcttgctttctctctt 120
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattgggaccacagagaacagcatgatatatatctaattgcttgcttgctttctctctt 320
Query: 121 cctctct------ctctctctct--ctctctctctctctctctctctctctttctctctc 172
||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctctctcttcctctctctcttcctctctctctctctctctctctctctttctctctc 380
Query: 173 tctttcctttttctctctttgccatactggggatggtacccccagtgagcctgggggagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttcctttttctctctttgccatactggggatggtacccccagtgagcctgggggagg 440
Query: 233 ggagggttccaccttgtcccctgccctacattttagtgtgaggtacttggatc 285
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ggagggttccaccttgtcccctgccctacattttagtgtgaggtatttggatc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
