BAC Information

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BAC

Clone NameMSMg01-293C06
Chromosome2 (Build37)
Map Location 95,468,692 - 95,469,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C06.T7 (MSMg01no293_c06.b1)MSMg01-293C06.TJ (MSMg01no293_c06.g1)
ACCAG421668AG421669
length727730
length of high quality
(start - end)
325 (40 - 364)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no293_c06.b1 PHD_FILE: MSMg01no293_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:27 2005CHROMAT_FILE: MSMg01no293_c06.g1 PHD_FILE: MSMg01no293_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGCTCTAGAACTGTAAAACGCAGTTATGAATATATGTATTTTCAAAACTC
ATAATGGTTTAAGTACATTGTCCAATTTGTGTTGGGCTGGGTGTACATAC
ATCCTCAGCCATAGGAAGCTGTATATAGCCCGCAGGCCACAAGCAGGACA
CAACTGTCTTATGACTTCTATGTGTTCTTATTGGTGGGGGATGGGCCTAT
CACCATCACCCTCCTCCTTCCTTCTCCCTGTTTTTCAAGGAGACAAATAT
CATTCAACAAAGTTGTGTCCTCATCACCTAGTAACTTACTCAAAGGTCCA
TTTTTATTTTTTTCTTTTACCCCCCCCCCAATCTCTGATCCTTTTTTACA
GTCCAGACTTCTCTCCCCCCCCAGATATGACCCCCCCCCCGCAGCTGGTG
CCCATCCAATACCTTTCCCCCACCCCCCTGCTGTCTCTGATAGGTTGTCC
CTACCCCATCCCACCAGGCCTCCCTACTCCCTGATTCATGAAGTCTCTCT
AGGGTTAGCTTATCTCCCCGTCCTGGGTTCTTTCTCTGCAGCCCTTTGCT
GCATATGCGTTGAGCTCCCATATCTCATGCCGTATGCTGACTATCCGTTG
ACTCTACGTTTGATACGACTCCCAATCCCCGATTACTTGATACTGCTGGT
CCTCTCATGGGTATTGTATTTTTTCCC
AAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGTCCCAGTATTCAGGGTGAGCAAGGAGT
CAGCAAAAGGTGACAGACACTGACACAAAAAGAGTGCTGTATCTGAATGT
AATTTCTCAAAGTGAGCATCAGATTGATAATACAGAAGAAAACAAAGCAG
TTAGGTGACACATCAGCCAAGGTACATTGACTTTATCTGACACAAAACAG
AGAAATGCTTACATAAAGACTGGCAGGCACCAGGCAGTGGTTACAACTGA
GATAAAAGGTGGTCCTTTCTAAATTCAGCCATTATAGGAGCCAGGTGAGG
ATTTCACACTTTTTTCTTCTACCCCCCCCCCCCCTCTGAGCCTTGTGAAA
GCCTGAACCAGAGGCACCCCCCGCCCAAGAAAAAATATCAATGAGGAAGG
CGGTGCTGTATTTCCTCCTTAAACCACAACTTTCCTTCTTCCTAGGCCAT
TGTAAAATATTGCATATGTGAGTAACTTGGCTGCTCTTTTATGCGTCTGC
AGGGAAACGCCATTTGTCAGATGAACTCACCAACTTTCTTCTAATATGGA
ATGTAGTCTGCCACTCCTTACTAAAATGAGGATTCTAAGTTTACCACTTT
GAACTAACTCTGAGATTACTACCCCCTATCCTTGCATACTGTGAGATGCC
TTATTAACATCTGACTATACCGTAGCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c06.b1 MSMg01no293_c06.b1 CHROMAT_FILE:
MSMg01no293_c06.b1 PHD_FILE: MSMg01no293_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:27 2005
         (325 letters)



>mm_chr2_95468485_95469205
          Length = 721

 Score =  507 bits (262), Expect = e-148
 Identities = 303/318 (95%), Gaps = 4/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcatgctctagaactgtaaaacgcagttatgaatatatgtattttcaaaactcataatg 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 208 ttcatgctctagaacagtaaaacgcagttatgaatatatgtattttcaaaactcacaatg 267

                                                                       
Query: 68  gtttaagtacattgtccaatttgtgttgggctgggtgtacatacatcctcagccatagga 127
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 268 gtttaagtacattgtccagtttgtgttgggcagggtgtacatacatcctcagccacagga 327

                                                                       
Query: 128 agctgtatatagcccgcaggccacaagcaggacacaactgtcttatgacttctatgtgtt 187
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agctgtgtatagcccgcaggccacaagcaggacacaactgtcttatgacttctatgtgtt 387

                                                                       
Query: 188 cttattggtgggggatgggcctatcaccatcaccctcctccttccttctccctgtttttc 247
           ||| || |||| |||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 388 cttgttcgtggaggatgggcctatcaccatcaccctcct---tccttctccctgtttttc 444

                                                                       
Query: 248 aaggagacaaatatcattcaacaaagttgtgtcctcatcacctagtaacttactcaaagg 307
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggagacaaatgtcattcaacaa-gttgtgtcctcatcacctagtaacttactcaaagg 503

                             
Query: 308 tccatttttatttttttc 325
           ||||||| ||||||||||
Sbjct: 504 tccatttctatttttttc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 721
Length adjustment: 9
Effective length of query: 316
Effective length of database: 712
Effective search space:   224992
Effective search space used:   224992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)