BAC Information

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BAC

Clone NameMSMg01-293C21
Chromosome2 (Build37)
Map Location 78,428,792 - 78,429,168
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717
Downstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C21.T7 (MSMg01no293_c21.b1)MSMg01-293C21.TJ (MSMg01no293_c21.g1)
ACCAG421697AG421698
length753747
length of high quality
(start - end)
377 (377 - 753)301 (62 - 362)
definitionCHROMAT_FILE: MSMg01no293_c21.b1 PHD_FILE: MSMg01no293_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:30 2005CHROMAT_FILE: MSMg01no293_c21.g1 PHD_FILE: MSMg01no293_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTAGTAA
TATCTTAATATTTATTATGGTTCCAAATGATAATAATTTAATGTGAATTA
TATAGAATACACCACTTAAAAGTAATTTTTATCTGTTTTCAAACAGGGAT
TATGCTCTTCAGTCAGAAGTGCTGAGGTATGCCTTTGAGGGATATAATTT
CCTATTTGGGTGGGGACATTGAAGAATTAACTTATAGACTGAGTCATTTC
TAGAACTATCTATGAACAAACACAGGATACCCTAGAAGTCATGTATCAAA
CTAAACAGGTGATCTTAGGTAAATGTATCTTATTTTTCTAAGAAGATCTG
TGATACATTTGTACACACCACACCCTTCCCATGGTTGAGTCACTTTCAAT
GGGGCATGGCCACCTACTGAATGACTTCTGTGCCAGTGTGTGGCTAATTG
GCCATATGCCCAGATTGCTACAGCCCTCTTTGGGTCAGTAATAGTCCTGG
TTCTTGGGTGAAGAACTGCTCACCTCTCAGAGGTGAATTAACTCTTTCTG
AACACTAGGGCACCATTAAGCACACTAGAAAAAAAGTAATTTACTCAATG
GTCCTCTAAGGACACCCTGGAGAAGAGAACAGAAGCTGTGAAATGCTAAG
CTCGCATGGAATTACTGCAGAATCAATTAGGGAAACAAGACAAATTAGAT
TGCATGTGCTCTGTCCAATTGAGACAGAAAGAATCTTTATGGGCAGGATG
TAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTTTTTTTTTCTCATTTATCTTTATGTTGGCTATAAGCT
TGCTGTAAGCTTGCTGTAAATTGTCTTTATTATGTTTAGATATGAGTCTT
GTATCCCAGTTCTTTCTAAGACTTTTGTCATGAAGAGTGTTGGATTTTGT
CAAAGGCATTTTCAGCCTTTTAAAAATCATTCTCATTTTCAAATGAGATG
ATTATGTGTTTTTTTCCAGTTTGTTTATATGGCGGAATATATTTATCGAT
TCTTGCATATTGAACCATCCCTGCACCTTTGTGGTAAACCTTTAAACTAA
TCTTTTTTTCTTCCCCCCCCCCCCTCTTTCTTTCTTTTCTTTCTTTCTTT
CTTTCTCCCCTTCTTTCATACAAACATTATTCTTTCGGTAGTGTGTCCTT
TATTTTCCCTGATTCTGTAAGCTTTTGATTGTTTCTGTTGTTGCCATCAT
CATGCTTCCTTTCCCGTTGTTGTTTATTCCTTTTTCCCTGATTTTGTCGA
CATTTGCTTTTATGTTCCTAATGCGGTTCTCTTTTCGGAGTTTGCTCTTT
TATTCCTCAAGAATCGCCTTTTCTTTTGTGTTTTCCCCCCCCGATCCTCC
AACGATCGGCTACGTTCATTTGGGTATTTCTAGCTTTGTTCACTCTTCCC
CCTCTTTTTGTCCCCCCCTCTTTTTGTCTTCACTTTTCCTTTTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c21.b1 MSMg01no293_c21.b1 CHROMAT_FILE:
MSMg01no293_c21.b1 PHD_FILE: MSMg01no293_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:30 2005
         (377 letters)



>mm_chr2_78428592_78429368
          Length = 777

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccatggttgagtcactttcaatggggcatggccacctactgaatgacttctgtgccag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 577 tcccatggttgagtcactttcaatggggcatgggcacctactgaatgtcttctgtgccag 518

                                                                       
Query: 61  tgtgtggctaattggccatatgcccagattgctacagccctctttgggtcagtaatagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtgtggctaattggccatatgcccagattgctacagccctctttgggtcagtaatagtc 458

                                                                       
Query: 121 ctggttcttgggtgaagaactgctcacctctcagaggtgaattaactctttctgaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctggttcttgggtgaagaactgctcacctctcagaggtgaattaactctttctgaacact 398

                                                                       
Query: 181 agggcaccattaagcacactagaaaaaaagtaatttactcaatggtcctctaaggacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agggcaccattaagcacactagaaaaaaagtaatttactcaatggtcctctaaggacacc 338

                                                                       
Query: 241 ctggagaagagaacagaagctgtgaaatgctaagctcgcatggaattactgcagaatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctggagaagagaacagaagctgtgaaatgctaagctcgcatggaattactgcagaatcaa 278

                                                                       
Query: 301 ttagggaaacaagacaaattagattgcatgtgctctgtccaattgagacagaaagaatct 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 277 ttagggaaacaagacaaattagatggcatgtgctctgtccaattgagacagaaagaatct 218

                            
Query: 361 ttatgggcaggatgtaa 377
           |||||||||||||||||
Sbjct: 217 ttatgggcaggatgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)