BAC Information

Click to search

BAC

Clone NameMSMg01-293D24
Chromosome2 (Build37)
Map Location 87,388,203 - 87,388,589
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293D24.T7 (MSMg01no293_d24.b1)MSMg01-293D24.TJ (MSMg01no293_d24.g1)
ACCAG421750AG421751
length746746
length of high quality
(start - end)		691 (45 - 735)673 (74 - 746)
definitionCHROMAT_FILE: MSMg01no293_d24.b1 PHD_FILE: MSMg01no293_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:36 2005CHROMAT_FILE: MSMg01no293_d24.g1 PHD_FILE: MSMg01no293_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCAGAGGCTTGCACACATGCGTGCACATGCACATAAACACACACA
CACACACATTCAATAGATAATGCAAATGCACAAGTAGTCAAAGTGCCAAG
AATGAGTATACGTGGAGTGCTCAGCCATATTGTGACATCCATAACACACC
TGTTCTCTGCAATCTCAGTCTTGGAAGAAGAGCAGGACAGATTGAAAATA
GAGGTTTGGGAAACACTGGGGCAAAAATGTTTTCTGGTCATGAGACCACC
ATTGATTTTTTTTAATGTAAGAACAATTGTGGTTGCCTTTACCAAGCAAG
GCGTTCAATAGTCTAGAATAAAGCAACGAGGTGCTTGTGCACTCCCAGCA
CTGTCTGAAGAGACATTGCTTGCTTATGGCTGATGAAGGAAAGGACTTAG
TTTTCATTAACATTGTGGCCCTGATCAGTCAACCATTATCCAGAGGATGA
CCACATATCTATGAATAGACAGGCAACACAAAAAAGTGTTTGTGTGTTAA
TGAAGCTCGAAAAAGAGGAAGACATAAAGTCTGAAGGAATGCCGGGCTGT
GATGACGCACACCTTTAATCCCGGCACTTGGGAGGCAGAGGCAGGTGGAT
TTCTGAGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA
GGGCTGTACAGAGAGACCCTGTCTCAGGAAAAAAATTAAGGGGAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAGTTATGAGCCTGTCAGCCTGCC
CCTGAGTGCACAAGATTTTGTCTCTTAGGAATAAGAGGAAGTTAAAATAA
CAGGATTAAGGTTGAGATTTCAAACAATCAACATGATTGAAGAGCATTCC
TATTATCAATCTTTAAACATTTTTATGTAGGTAATTCCCAAACTTAGCAT
TAGCAAATTGACTTCAATTAATTTGGTACTCATTACTTTGTGATCATCAC
TCATAATATATATTTTAATGTTATAAAATAGGGAACTATTACATATCCAT
ACACCTGTACAGATTTATGTTAACCCCAAAAATACAACAAACCATGCATT
CATATTTACTTAGTGGATACAGGAAACTTCATTAGCTCATTGCCTAAAGA
TATTTATATATGGTTCTTGTATTTTATGGCTAATATTGATATATAACTGA
GTACACACTGTGCATGCCCCTTTGGCACTGGGTTACCTCACTCAGGATGA
TATTTTCAAGTTCCATTCATTTGCCTGGAACATTCATGGTATCTTGGTTT
TATACAAATTTTATCTTGGTTTTATACAAATAAAAGTGCTATGAAAATAA
TCAAGCAATTGTCTTTGTGAGATGTTGGAGCATCTTTGGGTATATGCCTA
AGAGTGGTATATCTAGGTCTGCAGATAGAACTATTCCAAGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_d24.g1 MSMg01no293_d24.g1 CHROMAT_FILE:
MSMg01no293_d24.g1 PHD_FILE: MSMg01no293_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:36 2005
         (673 letters)



>mm_chr2_87388003_87389075
          Length = 1073

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctcttaggaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctcttaggaata 260

                                                                       
Query: 61  agaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatgattgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatgattgaaga 320

                                                                       
Query: 121 gcattcctattatcaatctttaaacatttttatgtaggtaattcccaaacttagcattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattcctattatcaatctttaaacatttttatgtaggtaattcccaaacttagcattag 380

                                                                       
Query: 181 caaattgacttcaattaatttggtactcattactttgtgatcatcactcataatatatat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 caaattgacttcaattaatttggtactcattactttttgatcatcactcataatatatat 440

                                                                       
Query: 241 tttaatgttataaaatagggaactattacatatccatacacctgtacagatttatgttaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tttaatgttataaaatagggaactattatatatccatacacctgtacagatttatgttaa 500

                                                                       
Query: 301 ccccaaaaatacaacaaaccatgcattcatatttacttagtggatacaggaaacttcatt 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 cccccaaaatacaacaaaccatgcattcatatttacttagtggatacaggaaatttcatt 560

                                      
Query: 361 agctcattgcctaaagatatttatata 387
           |||||||||||||||||||| ||||||
Sbjct: 561 agctcattgcctaaagatatatatata 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |