BAC Information

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BAC

Clone NameMSMg01-293E17
Chromosome2 (Build37)
Map Location 161,663,621 - 161,663,903
singlet/doubletsinglet
Overlap genePtprt
Upstream geneZhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293E17.T7 (MSMg01no293_e17.b1)MSMg01-293E17.TJ (MSMg01no293_e17.g1)
ACCAG421784AG421785
length714708
length of high quality
(start - end)
---283 (72 - 354)
definitionCHROMAT_FILE: MSMg01no293_e17.b1 PHD_FILE: MSMg01no293_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:39 2005CHROMAT_FILE: MSMg01no293_e17.g1 PHD_FILE: MSMg01no293_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGGGTTTCCCCCCCTCACCTCTGTAAACACAGGCACACGTTGCTATAGC
CTTCTTCTTAATTTACCGCGAGGATCGAAACTTAAGCCCTCGAATTTGCA
CAGCTAAGCACTTTAAGACTTTACCCACTGGATGATCGACTTTTGTGCCA
TTGACTTTTTTCTTTGTCTTACGGAAAGGTTATACACATGAGACCTCCTT
CTTACAGATTGTTTACATAATGTGGCGGTATACACCCCAGCCACAAACCA
GTGAGGAAGGCGATTGTTTATTGATGACAAGACTCTGGGAAGAGTGTACG
CTGATTTTTTTATAGCCCCCCCACCCATAGGTGACCATATAAGTGGATAT
GGAAGATTACTGCGAAAGAAAAACAGAAAATACTGATTGACTTGAACGAT
CTTGCATCCACTTATTAATATCGAGATCAACTATTTGCATCGCGCCATGC
CCTTTCATACTCAGACATCTTGCAAAGAGTATCCATTAACCCAGCCATGG
CTCTCCAGACATATGTAGCGGATCACGATCCTGCTCGGAAATAGTGCCAC
AAGACCCCGTCGCTCCTGCGGATGGATGATGACCAAGGGCCAGCATATGT
TTAAATAACGGTGCTAGTATATTGGCTTAGTGGAGGTTCCTTTTGTTCAC
AGGTTTGCAGTGTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACCCAAGTGGATAGATATGTGACACTGG
ATAAACTTGGTCTAGCCAGTCTTGAGTGTGACTGGTCCGTGCTTGGTCCT
TCTGTGTCTCCACAGCTCCATGTTTGTGTTTAGAACGCCACATTTTCTTT
GTAGGGTGCATGACCTGCCTCTGCTTTCACATTCATGTGTCCTTAGCATG
TTAGGTCACACCAGTCTCATGTTCTACCTTCTCTTTACCCACTTTTGCCC
TGGAGACATGCTTCTATATTTGGGCATATGCAGTTGACATGTCTGTTACA
GAGCCTTCATANNTTCCTTAGCCATTCCCTGTCTCAGGTTGGCCTTCTTC
GTGACAGACCTCCCCGCCAAAAATAAAATGAAATAGAAGATGAGGTTCTA
TTCATTTCACTCTAACAATATGCAAATCCCAACCATTTCCTCATAACAGA
GAATTAAAATGAAGAAATAACTAGTGTGAGTCACGTGGCACAGCTCAGCT
GAATATGATGCCCTGGTCGTTGTCCTTTGCTGAAACTCAGAACCACTCAG
CCCAGATTAAGGCAACTGCTGCCTTACTTCCCAGAGGTTCACATCTTCCT
CTCAAAATTCTCATTGTTATCCGAACTTCCATGGGTACCTCCTCCACCCC
CAATAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_e17.g1 MSMg01no293_e17.g1 CHROMAT_FILE:
MSMg01no293_e17.g1 PHD_FILE: MSMg01no293_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:39 2005
         (283 letters)



>mm_chr2_161663421_161664103
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccaagtggatagatatgtgacactggataaacttggtctagccagtcttgagtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccaagtggatagatatgtgacactggataaacttggtctagccagtcttgagtgtga 260

                                                                       
Query: 61  ctggtccgtgcttggtccttctgtgtctccacagctccatgtttgtgtttagaacgccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtccgtgcttggtccttctgtgtctccacagctccatgtttgtgtttagaacgccac 320

                                                                       
Query: 121 attttctttgtagggtgcatgacctgcctctgctttcacattcatgtgtccttagcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttctttgtagggtgcatgacctgcctctgctttcacattcatgtgtccttagcatgt 380

                                                                       
Query: 181 taggtcacaccagtctcatgttctaccttctctttacccacttttgccctggagacatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggtcacaccagtctcatgttctaccttctctttacccacttttgccctggagacatgc 440

                                                      
Query: 241 ttctatatttgggcatatgcagttgacatgtctgttacagagc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctatatttgggcatatgcagttgacatgtctgttacagagc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)