BAC Information

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BAC

Clone NameMSMg01-293F12
Chromosome2 (Build37)
Map Location 153,298,850 - 153,299,160
singlet/doubletsinglet
Overlap gene8430427H17Rik
Upstream gene9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293F12.T7 (MSMg01no293_f12.b1)MSMg01-293F12.TJ (MSMg01no293_f12.g1)
ACCAG421822AG421823
length739741
length of high quality
(start - end)
315 (45 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no293_f12.b1 PHD_FILE: MSMg01no293_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:43 2005CHROMAT_FILE: MSMg01no293_f12.g1 PHD_FILE: MSMg01no293_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTAATTTTCTTAAAGGGTAAGGTTATCTGGCATGAAGTTGCTA
AACAATATGGAGGCTGCAAAGGGCCACCCACCCCCCAATGGCCCTGCTCA
TACAGGGGATCTCTGCTCTTGGCCGTCCACACAGGGCAGATGACCTGATG
TAACTTAACTTACATCATACCTGAATGCCAGGGATGGTTATCAAAAAGCA
CTAATAAAGCCGATAACAGTTTGGCTTAGGAGGAAAACCCCAAAAGAACA
GTGTCTAGGATGGTGATCTGGAGCAGAAAAAGGGTCTTCCCTGGTCTGTG
CTCCCCAGCATCTCTGTTTTATCCGACCACGCTTCTGGGGCCTCAGGAGA
GCCAGGAGAGCTGACCCACGCCGACAAGATGAATGTGGCAGGGAAGCAGG
CAAACAAAGCTATCGGGGAACACCTGTGCTGGTGGGCAGACCAGAGTGAA
CACCCTGTTGGGGCAGCAGTGCCAACCTAGGCAGGGCATATGTCCAGGGA
GAAAGGGGTCCACAGAGATGGTATGGGAGGTCAGAACTGGTTTACCACGT
GGAGGAGGATGGCATAATATCTGGAGAAATCCCTTATTCTCCGGATATGC
TGATTGTAAAAACCCCCTATGCACCCCAAGGTGGCCCCTATGCGGGTAGG
ATGCCATTGCTTGTAAGTTAATGTTAGTTTATAATTGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTTCTAAAATAAATGCCAAAGG
AGTCACTTAAAGTAGTTTGGAAGATTTTTTATTTTGTTTTGGTTTTGCTT
TTTGAGACAGGGTTTCTGTGCGTAGCCCTTACTGTCTTAGAACTCGATCT
GTAAGCCATGCTGGCGTTGAATTTACAAAGATCCTCTTGCCTCTGATTCT
CCAATGCTGGGATTAAAGACATGGCCAATCTAGTTTTGGAGGGACTTTTA
AACAAACAAGCAAGTTCACTAACTTAACGTAAAGAGAAATTGAAGAATTA
AAAGTTCCCGTTTTGAATAACTCCACCCCCCCCCCCCATATACTTTTAAT
CCTAGCACATGGGAACCCCAANCAGAAAAAACAAAAGAGTTCCAGGCCAG
CCTGGTTTATGAAGTGAGTTCCTGAAAAGCCAGATCTACTTAGTGAGACC
CTGTCTTGAAAAACAAACATACAGGACATAAGAATATCCACTAAGGGTTC
TTTCTTTCTTAAAGACAGCGTCTCACGTGACTTCTGTCTCCCGTTGCATG
TAAGGACGACTTTGAATTTCTGATCTCCCCTGCCTCTGGCTCCTAAATGC
TGAATTCCCAGGCTTGTGTCTCTTCCTCTGCTTTTGTTGCCCTTCCGTCC
GATCATCGTTCCTTATCTCTTTCCCATTTCCTCTCTCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_f12.b1 MSMg01no293_f12.b1 CHROMAT_FILE:
MSMg01no293_f12.b1 PHD_FILE: MSMg01no293_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:43 2005
         (315 letters)



>mm_chr2_153298646_153299360
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttaattttcttaaagggtaaggttatctggcatgaagttgctaaacaatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttaattttcttaaagggtaaggttatctggcatgaagttgctaaacaatat 264

                                                                       
Query: 65  ggaggctgcaaagggccacccaccccccaatggccctgctcatacaggggatctctgctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaggctgcaaagggccacccaccccccaatggccctgctcatacaggggatctctgctc 324

                                                                       
Query: 125 ttggccgtccacacagggcagatgacctgatgtaacttaacttacatcatacctgaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggccgtccacacagggcagatgacctgatgtaacttaacttacatcatacctgaatgc 384

                                                                       
Query: 185 cagggatggttatcaaaaagcactaataaagccgataacagtttggcttaggaggaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagggatggttatcaaaaagcactaataaagccgataacagtttggcttaggaggaaaac 444

                                                                       
Query: 245 cccaaaagaacagtgtctaggatggtgatctggagcagaaaaagggtcttccctggtctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccaaaagaacagtgtctaggatggtgatctggagcagaaaaagggtcttccctggtctg 504

                      
Query: 305 tgctccccagc 315
           |||||||||||
Sbjct: 505 tgctccccagc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)