Query= MSMg01no293_k03.b1 MSMg01no293_k03.b1 CHROMAT_FILE:
MSMg01no293_k03.b1 PHD_FILE: MSMg01no293_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:06 2005
(689 letters)
>mm_chr2_93422483_93423567
Length = 1085
Score = 1222 bits (632), Expect = 0.0
Identities = 671/690 (97%), Gaps = 14/690 (2%)
Strand = Plus / Minus
Query: 5 gaattcctgggatgggactgtctttctatttgaactttctccttttagggagaagaagtt 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 885 gaattcctgggatgggactgtctttctatttgaactttctccttttaggg---agaagtt 829
Query: 65 gttgggggtggggcctggagcaggctaggcaaacaccgcctatgagtgacacctttagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gttgggggtggggcctggagcaggctaggcaaacaccgcctatgagtgacacctttagct 769
Query: 125 gaagcttcctttttagaagcacaggcagttgtttggagaaagggccatttttttctgggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaagcttcctttttagaagcacaggcagttgtttggagaaagggccatttttttctgggt 709
Query: 185 cggggtacaacaggaaagagggctgcactcaggacagacagcctatccagaggccggtcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cggggtacaacaggaaagagggctgcactcaggacagacagcctatccagaggccggtcc 649
Query: 245 aggaagcatggaaaaaagagagagtgtgtcctctcataccccagggagcccccaggtccc 304
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aggaagcatggaaaaa--agagagtgtgtcctctcataccccagggagcccccaggtccc 591
Query: 305 tgggccaccctctgtctcccaagactcctcctgagaatggtgaaatcttagcttttgagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgggccaccctctgtctcccaagactcctcctgagaatggtgaaatcttagcttttgagc 531
Query: 365 caggaatattg----ccccgaataaatgaaacgccccgagagtccctatggccccaaagc 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 caggaatattgtttt----gaataaatgaaacgccccgagagtccctatggccccaaagc 475
Query: 421 tcattttgaagggattacagcagctggcttgtaaatcctgtttcctatggtagggggctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcattttgaagggattacagcagctggcttgtaaatcctgtttcctatggtagggggctt 415
Query: 481 agagcaaggctcaggaaaagaccagggtgggaagagaaaggaggtcacttcatttcctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agagcaaggctcaggaaaagaccagggtgggaagagaaaggaggtcacttcatttcctgg 355
Query: 541 agaggaaagccagactccccactgcaaagcttgcggctggtctcaaggtgccctggggac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaggaaagccagactccccactgcaaagcttgcggctggtctcaaggtgccctggggac 295
Query: 601 aggaacgggccc-gggctggtgtttggtgggtaggcatgaggccccatcacctgtcagct 659
|||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 294 aggaacgggccctgggctggtgtttgatgggtaggcatgaggccccgtcatctgtgagct 235
Query: 660 cctgattgttcctcctctgtgcctcctgta 689
||||| ||||||||||||||||||||||||
Sbjct: 234 cctgactgttcctcctctgtgcctcctgta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1085
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1075
Effective search space: 729925
Effective search space used: 729925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_k03.g1 MSMg01no293_k03.g1 CHROMAT_FILE:
MSMg01no293_k03.g1 PHD_FILE: MSMg01no293_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:06 2005
(292 letters)
>mm_chr2_93264216_93264907
Length = 692
Score = 542 bits (280), Expect = e-158
Identities = 289/292 (98%)
Strand = Plus / Plus
Query: 1 tacagcttccagatctttccaatccacagctcagcagtggctgactttcacagaaagccc 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagcttccagatctttccaatctacagctcagcagtggctgactttcacagaaagccc 260
Query: 61 ctaccgagatctttcaactgacccttccacctgacctgtggcccagggactggccctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccgagatctttcaactgacccttccacctgacctgtggcccagggactggccctgtt 320
Query: 121 cccccaccacaggcctagagagacttgtgaacttaggcaagccacacaaccatgtgcaag 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccccaccacaggcctagagaaacttgtgaacttaggcaagccacacaaccatgtgcaag 380
Query: 181 aactgaagtttggacttgagcttgtctgctcaaagaacccagaccgacatccatctgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgaagtttggacttgagcttgtctgctcaaagaacccagaccgacatccatctgcaa 440
Query: 241 cgctcccgctgcgttcaaccacatgccagagacgctcctgtggtttgcgcac 292
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgctccggctgcgttcaaccacatgccagagacgctcctgtggtttgcgcac 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
