BAC Information

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BAC

Clone NameMSMg01-293K10
Chromosome2 (Build37)
Map Location 62,737,553 - 62,737,840
singlet/doubletsinglet
Overlap geneKcnh7
Upstream geneLOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca
Downstream geneEG667257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293K10.T7 (MSMg01no293_k10.b1)MSMg01-293K10.TJ (MSMg01no293_k10.g1)
ACCAG422044AG422045
length736737
length of high quality
(start - end)		698 (39 - 736)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no293_k10.b1 PHD_FILE: MSMg01no293_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:07 2005CHROMAT_FILE: MSMg01no293_k10.g1 PHD_FILE: MSMg01no293_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AGCAGAATAATCTTAAACAGCTGAGAAACACTTAAAGAAATGATCAAAGT
TCTTAATCAGAGAAATGCAAATCAAAATTACCCCAAGATTCCACCTCACA
CCAATCAGAATGGCTATGATCAAAAACTCAAGGGATAGCACATGCTGGCA
AGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTAGGATTGCAAAA
TGCTACAACCACTCTGGAAATCAGTCTGGCAATTCCTCAGAAATTTGGAA
ATAGTTCTACCTGAAGATCCACCAATACTACTCTGGGGCATATACCCCCC
CAAAATGGTCCTCCATACCACAAGAACACATGCTTCACCACATTCAAAGC
AGCCTTATTTGCAACGCCCAGAAACTGGAAACAACTCAGGTGTCACTAAA
CTGAAGAATGGATACAGAAAATGTAGTTAATTTACACACTGGCAAACTTA
CTATTCAACTATTAAAAAAAATGACAGCGTCATGAATTTTACAGGCAAAT
GAATAGAACTAGAAAATATCATCCTGAGTTAAGTAACTCAGACTGAAAAG
GACATACAAGGTATGTACTTCCTCATTAGGGGATATTAGCCAAAAAGTAC
CCAATACCTAGGCTACAACCCACAGACAGTAAGAAATGTACCAAGCAGAA
AGGCCCAAGTGAGGATGTTTTAATCCCACTTAGAAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATAGCTCACTTCCCTGTACTGGAGCTGATAGA
AAACAAAGTGATGAGCTGTAAATATTTTTGTGAATCTACTTAACACTGTA
ATTATGTTTCCTCTTTTTTCATCATTTCATCTTCCCTTGCTTTTCTACGT
GATTTCACATCACCTGTCATTTCAATCGTCTCCAACCAAAATGACAAAAT
GCTTGCAGAACAACACATACATTCTTTTGTGTATAAATTATTATTCTATT
GCTGTGATTAAGCAGCATGGCCAAGACTACTTGTAGGAGGAAAAAAGAGT
GTGTATTGTATATAGTGCCCCGCCAACCCATGATGGTAAGAATAGCAGGT
GGCAACCATGCCCCCTCGAAACTGGAAACTGACATCTCCCATCTCAATCT
GCAACCAGAACAGAGAAAGAGAGCTAACAGGGAAGGGCATGTGACTTTTG
AAACCTCAAAGCTTCACCTCACTGACACACTCTTCCAGGAAGACCACACC
TCCACAGCCTTCTTAAAGAATGCCAACAACAGGGACCACACATTCAAATG
CCTGAGATTATGTAGGACATTTCATTTAAACCACTTTAGTTAATTTCTGA
GATAATCAATTTGATATACATATGTACGTGTTAATAAATCAAACCGTAAT
CAGCTGGTTACTTAAAGCTAGAAATCTCAAGGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_k10.g1 MSMg01no293_k10.g1 CHROMAT_FILE:
MSMg01no293_k10.g1 PHD_FILE: MSMg01no293_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:08 2005
         (288 letters)



>mm_chr2_62737429_62738116
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagctcacttccctgtactggagctgatagaaaacaaagtgatgagctgtaaatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catagctcacttccctgtactggagctgatagaaaacaaagtgatgagctgtaaatattt 353

                                                                       
Query: 61  ttgtgaatctacttaacactgtaattatgtttcctcttttttcatcatttcatcttccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgtgaatctacttaacactgtaattatgtttcctcttttttcatcatttcatcttccct 293

                                                                       
Query: 121 tgcttttctacgtgatttcacatcacctgtcatttcaatcgtctccaaccaaaatgacaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 292 tgcttttctacgtgatttcacatcacctgtcatttcaattgtctccaaccaaaatgacaa 233

                                                                       
Query: 181 aatgcttgcagaacaacacatacattcttttgtgtataaattattattctattgctgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aatgcttgcagaacaacacatacattcttttgtgtataaattattattctattgctgtga 173

                                                           
Query: 241 ttaagcagcatggccaagactacttgtaggaggaaaaaagagtgtgta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttaagcagcatggccaagactacttgtaggaggaaaaaagagtgtgta 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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