BAC Information

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BAC

Clone NameMSMg01-294A10
Chromosome2 (Build37)
Map Location 171,515,456 - 171,515,739
singlet/doubletsinglet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294A10.T7 (MSMg01no294_a10.b1)MSMg01-294A10.TJ (MSMg01no294_a10.g1)
ACCAG422309AG422310
length719719
length of high quality
(start - end)
321 (44 - 364)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no294_a10.b1 PHD_FILE: MSMg01no294_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:36 2005CHROMAT_FILE: MSMg01no294_a10.g1 PHD_FILE: MSMg01no294_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTATGATTATAACTATTACACCTATCACACATACAATACACAAAC
ACATACAATACACACATATACATACAATAATATGCACACACATAATACAC
ACATATAACACACATATACACACATATAGTACACATATACACATAATACA
CACATATACATACATGTACATATGTATGCATACATGCACATACACACATG
CATACAGATACATACATAATCGCATACATACACACACACACACACACACA
CACACACACACACACTTGCTCACACAAAACCTGCTGAGCCCACTTACTGT
TTCTTATGTGTTTGTTTATTCCCCACCGCCATTTATACTTGGGACTGGAT
AACCTACCAGAAGTCACACCCCTGAAAAATACAGATTTTGCTTCTCTCAG
AAGCTATTGATTATCTGCAGCTCTTCATCTAGGGAGTTTTTTTTTTTTTG
TTTTTTTTTTTTGAGAACTCTTCCCCATCCATATTGGCTGTGTACTGGTG
TTGTCAATATGTAGATTTTCCTTGTGACAATCTTGTTGAGTTTCATAGCT
AGGGTTTCCCTGTCATTTCTGGAAGACACTGTGTATCAGCCAGCTCCTGG
TCCTCTGGCTGTTACAGTCTTTCCATTCCTCTTCTGCGGCTCTCTTTGAG
TCTTGGATGAGAGGGTTAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTGTAAGAGACAGCCACTCAC
AGAGGCAGTTGCTAGGAGAGTGAGGGCTACTTCTATATGGAGGGGAAGAA
AACAAAACACTATCACATTAAATTACTGGACTGTAGTCACCCCTTTCCCC
TACTAGGAAAGCCATCAAACTTCGCTGCTGCTTTAAACAGTATATGTGCC
TGCTTATGTTCCTTGGAAAACTTCTTTTACATGATGATAGATAATTACAT
TTTACCTCCTCTTCTAACAATAAGGAGGTCACTATATTCAGACACTTCTC
CATCCTTAATTATTTTATTATCCAGACCACACAATGAGGAAAATCAACGG
ATTACTGTGTGGTGGACGCCCAACTCTTAAAGTAGCAAAGTAGAGGAATG
TCGTCTTCCAAAGTAGACGTGGCATTTGGAGTCTTTAGTACAGGGATTCT
CAACCTTCCTTAAGCTATGACCCTTTAATGCTGTTCCTCCTGTTGTAGTG
ACCTCAGCCATAAAATTATTTTCATTGCTACTTCCTAACTGTCATTCTGC
TACTGTTACAAATTATAATGTAACTATCTGATGATACCTGAGGGGTCGCA
TCCCACAGATACTTTGCTGTTACAAGCTGTTACCCTGCTGGTTGGCGGCG
GGAGGACAAGCTAGGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_a10.g1 MSMg01no294_a10.g1 CHROMAT_FILE:
MSMg01no294_a10.g1 PHD_FILE: MSMg01no294_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:36 2005
         (287 letters)



>mm_chr2_171515256_171515943
          Length = 688

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%), Gaps = 3/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctctgtaag-agacagccactcacagaggcagttgctaggagagtgagggctacttc 59
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctctgt-agaagacagccactcacagaggcagttgctaggagagtgagggctacttc 259

                                                                       
Query: 60  tatatggaggggaagaaaacaaaacactatcacattaaattactggactgtagtcacccc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatatggaggggaagaaaacaaaacactatcacattaaattactggactgtagtcacccc 319

                                                                       
Query: 120 tttcccctactaggaaagccatcaaacttcgctgctgctttaaacagtatatgtgcctgc 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttccccctactaggaaagccatcaaacttcgctgctgctttaaacagtatatgtgcctgc 379

                                                                       
Query: 180 ttatgttccttggaaaacttcttttacatgatgatagataattacatttt-acctcctct 238
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 ttatgttccttggaaaacttcttttacatgatgatagataattacatttttacctcctct 439

                                                        
Query: 239 tctaacaataaggaggtcactatattcagacacttctccatcctt 283
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctaacaataaggaggtcactatattcagacacttctccatcctt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)