Query= MSMg01no294_d04.b1 MSMg01no294_d04.b1 CHROMAT_FILE:
MSMg01no294_d04.b1 PHD_FILE: MSMg01no294_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:49 2005
(320 letters)
>mm_chr2_117723886_117724605
Length = 720
Score = 569 bits (294), Expect = e-166
Identities = 309/314 (98%)
Strand = Plus / Plus
Query: 7 attcttctcccttcatactttagcagaataaactgtcctattgcaatgacataaagagct 66
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 attcttctctcttcatactttagcagaataaactgtcctattgcaatgacagaaagagct 266
Query: 67 ttcaagctaagaccatcatctacttccaccccaggcatgagctgctggtgaaaagaaaca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttcaagctaagaccatcatctacttccaccccaggcatgagctgctggtgaaaagaaaca 326
Query: 127 ttcctggagaggtattttggagatttttctgtgttagaataatgcttgtgtctaacaatg 186
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcctggagaggtattttggagaattttctgtgttagaataatgcttgtgtctaacaatg 386
Query: 187 gctaagaagcaccaaactgtctcccccaaacccacagcgatatcactcagagagttttaa 246
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 387 gctaagaagcaccaaactatctcccccaaacccacagccatatcactcagagagttttaa 446
Query: 247 caaaacattgattaacaaatcataaacataaaaacttttggattgtaatttcttgttctc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaaacattgattaacaaatcataaacataaaaacttttggattgtaatttcttgttctc 506
Query: 307 atgagaattgagag 320
||||||||||||||
Sbjct: 507 atgagaattgagag 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_d04.g1 MSMg01no294_d04.g1 CHROMAT_FILE:
MSMg01no294_d04.g1 PHD_FILE: MSMg01no294_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:50 2005
(475 letters)
>mm_chr2_117873597_117874469
Length = 873
Score = 708 bits (366), Expect = 0.0
Identities = 402/416 (96%), Gaps = 5/416 (1%)
Strand = Plus / Minus
Query: 1 agtctagaagctgacagaatatctccttttccttttcacagacatagaagggccaggctg 60
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtctagaagctgccagaatatttccttttccttttcacagacatagaagggccaggctg 355
Query: 61 tacatggttttgaatgagtgcctattagacatgatggacaggagagcgatacagagtttc 120
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 354 ttcatggttttgaatgagtgcctattagacatgatggacaggagagcgatac--agtttc 297
Query: 121 agagtgggaaaataatgaatggtaagtgctttcagacaaaagccttatgaagttattaag 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 296 agagtgggaaaataatgaatggtaagtgcttttagacaaaagccttatgaagttattaag 237
Query: 181 aagtgagttggcatagaggagaggctacttatgttt---ttattattattatcattatta 237
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 236 aagtgagttggcatagaggagaggctacttatgtttttattattattattattattatta 177
Query: 238 ttattattattattattactactactactactattgaggcatagacctagaaagtaaaaa 297
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttattattattattattattattactactactattgaggcatagacctagaaagtaaaaa 117
Query: 298 ttgaaaacttcaaagccattcaaagagacagattctgatgcagaggcaggagcggatccc 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 116 ttgaaaacttcaaagccattcaaagagacagattctgatgcagaggcaggagaggatccc 57
Query: 358 taggaggaaggaagtcttcctctttctcttttccttaccagactttgagaagagct 413
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tgggaggaaggaagtcttcctctttctcttttccttaccagactttgagaagagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 873
Length adjustment: 10
Effective length of query: 465
Effective length of database: 863
Effective search space: 401295
Effective search space used: 401295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
