AACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATCCTCAGCTCTGCAAATGAAAGGAAACCAAGCAGAATA
GTTCTTACTCATTCCCTGGTGCAAGCCAGACATACCTGCTGCCTAACAGT
GATAAAGCTGACAAGAATAATTCCTTGTATTTAAAGAGACCACACAGACT
TTCTCATTTTGAGATTCTCTATGAGATGTCTTTTCTCTGACTCCTCCACC
TCCTCTCTCTTTCCTTCTCCCCCAACCCCCTTTCTGTTTCTTCTTCTTTT
CCCTTTCCCCTGGGAATGAACCCTAAGAAAGGATTCTACCACTAAACTTC
CCCAGTCTTTCCTTCCTTCCTTATTTATTTCCCCCCCCCCCCAGGCAGGG
TCTTAATATACAGCTCAGCTTAGCCTCAAACTCACTGAGAAAACCAGGCT
GGCCTCAGACTTATAAGCCTCCTGCCTCTGTCTGCTCCTGTGTGCTGGGA
TTAGTGGTATGTGTCACAGAACCTGTTCCTCGTGATCCATTTTTAATTGT
ACTGACAAACCAGTATTTGTGTGATTATGCAATGTGTTGCTATGGATTTG
AGCAATGTCTAGAATAAGTATTTGATTGCACATTATTAGAACTTGTTTCC
AAGTCCTTGGTGGGACTTCACAGAGCTCTGCTGTGTGTTTGGTTATGTGA
ACAAAGCCTTTGAAAACTCCAGTTGATTTCC

ATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGAGTTGGGTGTCCAGG
ACAGTGCCTGAGATTTCTGAGTGGTTGTCCCGGAGAATGGGGAGGCAGGT
CAGAGTGGGGCACTGTCTTGAGCTTGAGAGAACTGGATGCACCAGAAGCC
TCCCAGAACCGGTTTTCACTGGTAAAGGCAACGCTAAATACTTCTCCCAC
TGTAGGGGGATGGAGACTGCCACAGACTACTTATTAAACTGCCTCTCCCT
CTTGAGAAAAGGAAAGTGCAGTGACTCGGGCCTTAACTGTGTGTTTTATG
TCTAATTGTGCAAAGATGGTCACTANCATCCTNGCTTGCCCGAGGCTCCC
ATGATTTTTTTTTTCCTCTGACTGAAATCATCAAAAAAGAAACTCTGGAC
TATGAGCTTGCTCTTTAGACAATATGCCACCCAAATAATTCAGGTTTAAT
GAAAGCAAACCTGGTAAAACAAAACGACAAACAAACAAATACCTGGCTAC
AAGGCCTATTGGATTTACTTGCTGCAAAATTGTATAGTAGCATGAAGCTG
TGTAGGAGGAAAGCCGAGCTTGACATTGAGCAAAGCAATTCTCCGAAGAG
CATGGAATGCAGGGTCCTGCTCAAGGCCTTANCTGGGTTGGGTTGGGGGT
GGGGCGTTCCCACCACTGATATTCTTCTGC

Query= MSMg01no294_d21.b1 MSMg01no294_d21.b1 CHROMAT_FILE:
MSMg01no294_d21.b1 PHD_FILE: MSMg01no294_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:53 2005
         (320 letters)



>mm_chr2_76840692_76841411
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcctcagctctgcaaatgaaaggaaaccaagcagaatagttcttactcattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcctcagctctgcaaatgaaaggaaaccaagcagaatagttcttactcattc 264

                                                                       
Query: 65  cctggtgcaagccagacatacctgctgcctaacagtgataaagctgacaagaataattcc 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctggtgcaagccagatatacctgctgcctaacagtgataaagctgacaagaataattcc 324

                                                                       
Query: 125 ttgtatttaaagagaccacacagactttctcattttgagattctctatgagatgtctttt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ttgtatttaaagagaccacacagactttctcattttgagattctctatgagatggctttt 384

                                                                       
Query: 185 ctctgactcctccacctcctctctctttccttctcccccaaccccctttctgtttcttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgactcctccacctcctctctctttccttctcccccaaccccctttctgtttcttct 444

                                                                       
Query: 245 tcttttccctttcccctgggaatgaaccctaagaaaggattctaccactaaacttcccca 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttcccctttcccctgggaatgaaccctaagaaaggattctaccactaaacttcccca 504

                           
Query: 305 gtctttccttccttcc 320
           ||||||||||||||||
Sbjct: 505 gtctttccttccttcc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no294_d21.g1 MSMg01no294_d21.g1 CHROMAT_FILE:
MSMg01no294_d21.g1 PHD_FILE: MSMg01no294_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:53 2005
         (239 letters)



>mm_chr2_77007698_77008336
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatggggaggcaggtcagagtggggcactgtcttgagcttgagagaactggatgcacc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 426 agaatggggaggcaggtcagagtggggcactgtcctgagcttgagagaactggatgcacc 367

                                                                       
Query: 61  agaagcctcccagaaccggttttcactggtaaaggcaacgctaaatacttctcccactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agaagcctcccagaaccggttttcactggtaaaggcaacgctaaatacttctcccactgt 307

                                                                       
Query: 121 agggggatggagactgccacagactacttattaaactgcctctccctcttgagaaaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agggggatggagactgccacagactacttattaaactgcctctccctcttgagaaaagga 247

                                                         
Query: 181 aagtgcagtgactcgggccttaactgtgtgttttatgtctaattgt 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagtgcagtgactcgggccttaactgtgtgttttatgtctaattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)