Query= MSMg01no294_g20.b1 MSMg01no294_g20.b1 CHROMAT_FILE:
MSMg01no294_g20.b1 PHD_FILE: MSMg01no294_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:06 2005
(316 letters)
>mm_chr2_27947389_27948104
Length = 716
Score = 586 bits (303), Expect = e-172
Identities = 306/307 (99%)
Strand = Plus / Plus
Query: 8 ttcagcaagcaagttattactgctttctcaagcacttgatttttgcaattcctccacaaa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcagcaagcaagttattactgctttctcaagcacttgatttttgcaattcctccacaaa 267
Query: 68 ctctttcgataacaaacatttcaaaaggcctggcaaatgagaactgcaaacaggccgtgg 127
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 268 ctctttcgataacaaacatttcaaaaggcctggcaaacgagaactgcaaacaggccgtgg 327
Query: 128 tctgtcctgtggtttcctcagcagaacccagatctctgctccaactggtggcttagctga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctgtcctgtggtttcctcagcagaacccagatctctgctccaactggtggcttagctga 387
Query: 188 aacaccctagagaaatcgctgtagtataccagtcctgtgcaaactggtggcaggttcctc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacaccctagagaaatcgctgtagtataccagtcctgtgcaaactggtggcaggttcctc 447
Query: 248 tttccaagcactggacagcaggcatcgtctgtgactcgtggggagttgcacgatgtgaat 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttccaagcactggacagcaggcatcgtctgtgactcgtggggagttgcacgatgtgaat 507
Query: 308 ttcctgc 314
|||||||
Sbjct: 508 ttcctgc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_g20.g1 MSMg01no294_g20.g1 CHROMAT_FILE:
MSMg01no294_g20.g1 PHD_FILE: MSMg01no294_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:06 2005
(289 letters)
>mm_chr2_28147805_28148493
Length = 689
Score = 433 bits (224), Expect = e-126
Identities = 276/304 (90%), Gaps = 21/304 (6%)
Strand = Plus / Minus
Query: 1 tcgcccctggggcttggattctgcccggttaaggtcatcgtcttttctcactatgcct-g 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 387 tcgcccctggggcttggattctgcccggttaaggtcatcgtcttttctcactatgcctgg 328
Query: 60 aggcttgtcagtaggggaggtgggcagagtgtttctaagtcagcaccagagccatgggac 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 a-gcttgtcagtaggggaggtgggcagagtgtttctaagtcagcaccagagccatgggac 269
Query: 120 aagggtgtttcagcttgtaggaaactgaccttacaatgtcacctaatgactgcaggggtg 179
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 268 aagggtgtttcagcttgtaggaaactgaccttacaacgtcacgtaatgactgcaggggtg 209
Query: 180 ag----------------gcactgacactccagaaagtagagatgagacccaagccacta 223
|| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 208 agccactgcaggggtgaggcactggcactccagaaagtagagatgagacccaagcaacta 149
Query: 224 ct-ccccgcccctgccgggagatttcccagttaccactgctcctctgatgatgtgccaga 282
|| |||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct: 148 cttccccacccctgccgggagatttcccagttccca--gctcccctgatgatgtgccaga 91
Query: 283 ggcc 286
||||
Sbjct: 90 ggcc 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
