BAC Information

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BAC

Clone NameMSMg01-294K21
Chromosome2 (Build37)
Map Location 169,326,949 - 169,327,187
singlet/doubletsinglet
Overlap genenone
Upstream geneNfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K21.T7 (MSMg01no294_k21.b1)MSMg01-294K21.TJ (MSMg01no294_k21.g1)
ACCAG422790AG422791
length742738
length of high quality
(start - end)
239 (119 - 357)237 (122 - 358)
definitionCHROMAT_FILE: MSMg01no294_k21.b1 PHD_FILE: MSMg01no294_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:25 2005CHROMAT_FILE: MSMg01no294_k21.g1 PHD_FILE: MSMg01no294_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTG
ATGGATGTGTCTAAGGGGACGCATGTCTGTGACTACCATGAAGGCGATGT
AGGGCTTACTGTGTGCCCTACAGCCACTCAGTTCTGTTTGCCTACATTCT
AAAGAGTGTGTATGTGTTGGGGCAGGGGGGTGTACATCAAAACAAAGGTA
TGGATTTAGCAAAGCTGAATAAATGACAAAATGACCTAATGGGAAACAAC
TGGGAATTTGATTTCATTAGAAACAGCCCACCAGACATTTCTCTTTCTCA
TCTTAGCTTCTGAGAGCTGTCACCAATCTCATGGTGGTACAAGCTCTGGG
CACAGTCTTTTTTTCCATCTCACCCCCACCGGTTCTCACTCATAGCCTCC
AACCCTCCTTTAGGGAGTTTCTTTGAGAAACAAGGCTCTAACCAGCACCA
ACAGTCAGCAACTTCTAAATTGTATCCCCAGTTGATTTTTTTTCATTTCC
ACCATTTATTTGATTTCTCTCTTGGACCAGTATTCTCTCATCTCCAGCTT
AACAAATTCACCCATCACATGTTAAGTTTTCTAAGAAGGGCAACTGACTG
TGAACCTAAAAATAAGATGGTATAAATAAGCAGGGTTGCTCAGTGGTTTC
TGCTTGAGCTCTGCCTTGAGATTCCTCAATGATGGACTGATCCTGTAAGA
TGAAATAAACCCTTTACTCCACAAATTGGTTTTGGACTGTGT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAGGACCAGGAGAATGAATGGAAATATGTGG
CTTTCTGGGGTGTTAGGCCGATGGAACTTCTAGAAAGTTTCAGAGACCTG
GGATGTGAGAGACTCCCAGGACTCAATGTGGAGGATGGCCTTAGCTGAAA
TGCCCAACAGTGGGGAGATGCAACCTGAAGAGACCAGCTCCAGCAGTTAG
ACAGGGCTCCCAATGAAGGGATGTTGACCCAGACTTGTTCCTGTCTAAAA
GAAAGTCAGGGACAAACATGGAGCAGAGACTGAAGGAAAGGCAGTCATCC
ACTGACCCTTNCCTANTGTACACCCACCCCCCGGGTGGGCACCAAACCCG
GACACTATTACTGACTCCAAGTTGAGAAAAAAAACAGGAGCCTAGCATGC
CTGTCCTCTGAGAGGCTCTACCAGCAGCTGACTGAGGCAGATGGAGAAAC
CGACAGCCAACAACTAGACTGAGGACGGGACCCCTACAGAAGAGTTAGGG
GAAGGACTGAGGGAGCACCTTCTCACAGGCTTAGGGGATGGGGGATGGAA
TGAAGAACGCTGGCAGGGGGGCACCCAGAATGTGCGTGGGGCAATATTTG
GGATGTAAATAAATGACATAAAATTTTACAAGTTTCTTTTACACATCTCC
ATCTGCTGATAGGCTCAGGGCTGCTACCCATGTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k21.b1 MSMg01no294_k21.b1 CHROMAT_FILE:
MSMg01no294_k21.b1 PHD_FILE: MSMg01no294_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:25 2005
         (239 letters)



>mm_chr2_169326749_169327387
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagccactcagttctgtttgcctacattctaaagagtgtgtatgtgttggggcagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacagccactcagttctgtttgcctacattctaaagagtgtgtatgtgttggggcagggg 380

                                                                       
Query: 61  ggtgtacatcaaaacaaaggtatggatttagcaaagctgaataaatgacaaaatgaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtgtacatcaaaacaaaggtatggatttagcaaagctgaataaatgacaaaatgaccta 320

                                                                       
Query: 121 atgggaaacaactgggaatttgatttcattagaaacagcccaccagacatttctctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgggaaacaactgggaatttgatttcattagaaacagcccaccagacatttctctttct 260

                                                                      
Query: 181 catcttagcttctgagagctgtcaccaatctcatggtggtacaagctctgggcacagtc 239
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catcttagcttctgagggctgtcaccaatctcatggtggtacaagctctgggcacagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)