BAC Information

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BAC

Clone NameMSMg01-294M09
Chromosome2 (Build37)
Map Location 61,184,024 - 61,184,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLy75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M09.T7 (MSMg01no294_m09.b1)MSMg01-294M09.TJ (MSMg01no294_m09.g1)
ACCAG422859AG422860
length708707
length of high quality
(start - end)
316 (49 - 364)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no294_m09.b1 PHD_FILE: MSMg01no294_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:31 2005CHROMAT_FILE: MSMg01no294_m09.g1 PHD_FILE: MSMg01no294_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTTTTACAGGAGGAATGAATGTCTGTCTCAATTTATTTGC
ATGGATTTCTGCCTATTGTATTTCAGTTTTAACAGTTACAGAGTGGGAAT
GTAAATAAATAAAATAAATTTAAAAAAAGAGTTATGGACTGTTTTGAAAG
GAGACTTTCACCTCAAGTACAAGGGGGAGAACAGTGAATTCTATATATCT
CACAGAAACCATGCCACTGTGTGGAAGAAGCCACACTTCTCCTCTCCCCA
ACACTTTCCCATTAAAGAAAACATGGAACAGTTTTAATTACCCCCTGCAC
ACAAATTTGGGGAGTAGTGGTGTTTATAACCAAGAAGTGTTTTATGAGGC
GGAATGAAAGTCTCACAAGGACACCTGGCATCATGCAAACCTGGTGTCAC
ACAGCGAGTTGTTTTGAAGTTATCCTTGGTTGAGCAAGGTAACGTCAGAA
AGAATAGAAGGGATGGGTACATTACAAGTAATAAAAAGAGAAGACACCTT
AAGGTCGTTGGAAGGTGAAAGAAAATAGGTCACTGAAAAGTAATCCCCGT
GAACCTTGGCCTGCTGCAGCGCCTCCCTCTGGAGCTAGGCTGGGCTGGAC
TGAGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGTGCTGGGCTGTGT
TGGATATT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAAGGGGAATGCAGAAGC
AGAGGATCTGGGAAACGGTGACCCCTGTGGGGGTAGCTGGGGGCAGTGGA
AGGAGGAGAAACTATGGTCAGATGAAATGTATGAGGGAAGAGTCGATTTT
AAAAGTGCAGGCACACTAAAAATATCATAACGGCCTGGTAAGTTAGCTCA
GTGGGTAAAATCTTTTGCTGTCAAACCTGGTGACCTGAGTTCAGCTTCTG
TGATCTACATGATAGGAAGAAAGAACTCATCCCAGCAGGTTGCCCTCTGA
CCTCTATATCTTCATAATACCCCCCCCCCCCCGTACCCACAAATAAATTA
ATTTGAAAAGCATATGACCCCACTATCAAAAAATGTGCATAGGATGTGCG
TGAAACATAAATGAATTTTGTGTTTTGACCTGTGTCCCAGGCCCATAATA
TATTATTTTAAGTATATGTTATATATTATAAGCATATATAAATGAATATT
TCAAAATGTGAAAAAACTCAGAAACACTTCTGGCTCTGAGCATTTTGAAC
AAGGAATACTCAACCTGTATGAATGCAGATCTAAGCTTCAAACACATACA
ATTTTTTACATTGTTAAATAGACTTAGCATTGCTTTAAGGAATAGTGGAA
GCTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m09.b1 MSMg01no294_m09.b1 CHROMAT_FILE:
MSMg01no294_m09.b1 PHD_FILE: MSMg01no294_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:31 2005
         (316 letters)



>mm_chr2_61183820_61184535
          Length = 716

 Score =  543 bits (281), Expect = e-159
 Identities = 305/313 (97%), Gaps = 2/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttttacaggaggaatgaatgtctgtctcaatttatttgcatggatttctgc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttttaaaggaggaatgaatgtctgtctcaatttatttgcatggatttctgc 264

                                                                       
Query: 65  ctattgtatttcagttttaacagttacagagtgggaatgtaaataaataaaataaattta 124
           |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 265 ctattg-atttcagttttaagagttacagactgggaatgtaaataaataaaataaattaa 323

                                                                       
Query: 125 aaaaaa-gagttatggactgttttgaaaggagactttcacctcaagtacaagggggagaa 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaaaaagagttatggactgttttgaaaggagactttcacctcaagtacaagggggagaa 383

                                                                       
Query: 184 cagtgaattctatatatctcacagaaaccatgccactgtgtggaagaagccacacttctc 243
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtggactctatatatctcacagaaaccatgccactgtgtggaagaagccacacttctc 443

                                                                       
Query: 244 ctctccccaacactttcccattaaagaaaacatggaacagttttaattaccccctgcaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctccccaacactttcccattaaagaaaacatggaacagttttaattaccccctgcaca 503

                        
Query: 304 caaatttggggag 316
           |||||||||||||
Sbjct: 504 caaatttggggag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)