BAC Information

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BAC

Clone NameMSMg01-295G15
Chromosome2 (Build37)
Map Location 13,636,345 - 13,636,657
singlet/doubletsinglet
Overlap geneSt8sia6
Upstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim
Downstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295G15.T7 (MSMg01no295_g15.b1)MSMg01-295G15.TJ (MSMg01no295_g15.g1)
ACCAG423313AG423314
length749748
length of high quality
(start - end)
314 (433 - 746)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no295_g15.b1 PHD_FILE: MSMg01no295_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:20 2005CHROMAT_FILE: MSMg01no295_g15.g1 PHD_FILE: MSMg01no295_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGTCCTTAAACTCAGACCAGAAAGGACCAGCTTAAAAGGTC
AGAGAAGAACAGAGAACCAAAAGGCCGCATGTCACCTTCAAAAGCAACTT
TAAAGTTGAAGGGACACATACCCAAAAGATCTTGCAAATGACTAAAAATC
ATTCCTTCTACAAGGCGACCTAAGATTTAGAAACCCTTGCTTTGTTAACA
GGCTGTCAAGCGAAATGCTCACACTCTGGCTGATCTGTTGTAATTTACAC
CATCTCTTTTCACACAGTAATTCAGGTCATGTTGTTCTCTCCAGGGTAAT
GAAGCATGACAATTTTTTAGGGCCCGCCTTCAATCCACTTTCCATGTCAC
CTGCAATGCAGCTCCTGCCAAAGAGCTCCTTTATGCTGCCCCATGAAGAA
GACATCTTTCAGGGAATTCTGTTGTAGTTGAAAACCGAGTGGCATGCAAA
AGTAACAGATATACTGACTAAGTAGCTTATGGAACAGCCACAGACCAACA
GTGCCAGACAGAAGTTTTGAATCATAATTCTGAGCATTGCACCTTACCCA
GGAAAACTGTCTGAATACAAAGTGAGCCCGTTCATGCTTTAATGATTTTG
CAGAAAGTTATAAGGCAGGGGATACACTTCCTTCTGAAGAAGAAGATCTC
TGATCCTCTTAGTAGAGATAATTTATAAAAGGCTCAAAGATTCGAAAGA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACTAAATCCTGGGCTTTTGA
GGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGTTATGGGTC
TTTTTAGATGGTTTATCTGATCCTGTTTTAATTTTGGCACTTGGTGTGTA
TCTAGAAAATTGTCCATTTCATCCAGATTTTCCAATTTAGTTGAATATAA
ACTTTTGTAGTAGGATCTGATGATTTTTTGGATTTCCACAGTTCCCATTG
TTATGTCTCCCTTTTAATTTCTGCTTTTATTAATTTGGATACTGTCTCTG
TATCCTTTGTTATTTTTGACTACCCCCCCACCTATCTTGTTGATTTTCTC
AAAGAACAAGCCCCTCCGCCCTGTTGATATCTTTGAATAGTTCTTTTTGT
TTCTAGTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCCGTCTAC
TTCTCTTGGGTGAATTTGCTTCTTTTTGTTCTAGAGCATTCAGGTGTGCT
GTTAAGATGCTAGGGTAACCTCTCTACAGTTTCTTTTTTGAGGCACTTAG
AGCTATGACTTTTCCTCTTACCACTGCTTTCATTGTGTCCCATAGCTTGT
GGTATGATGTGTCATCATTTTCATTAAACTTTACAAAGTCTTTAATTTCT
TTATTTCTTCCTTGACCAAGTTATTATTGAGTACAGCATTGTTCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_g15.b1 MSMg01no295_g15.b1 CHROMAT_FILE:
MSMg01no295_g15.b1 PHD_FILE: MSMg01no295_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:20 2005
         (314 letters)



>mm_chr2_13636145_13636857
          Length = 713

 Score =  545 bits (282), Expect = e-159
 Identities = 306/314 (97%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgccccatgaagaagacatctttcagggaattctgttgtagttgaaaaccgagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgccccatgaagaagacatctttcagggaattctgttgtagttgaaaaccgagtgg 260

                                                                       
Query: 61  catgcaaaagtaacagatatactgactaagtagcttatggaacagccacagaccaacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcaaaagtaacagatatactgactaagtagcttatggaacagccacagaccaacagt 320

                                                                       
Query: 121 gccagacagaagttttgaatcataattctgagcattgcaccttacccaggaaaactgtct 180
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagacagaagttccgaatcataattctgagcattgcaccttacccaggaaaactgtct 380

                                                                       
Query: 181 gaatacaaagtgagcccgttcatgctttaatgattttgcagaaagttataaggcagggga 240
           |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gaatacaaagtgggcc-gttcatgctttaatgattttgcagaaagttacaaggcagggga 439

                                                                       
Query: 241 tacacttccttctgaagaagaagatctctgatcctcttagtagagataatttataaaagg 300
           ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 440 tacacttacttctgaagaagaagatctctgatcctcttactagagatactttataaaagg 499

                         
Query: 301 ctcaaagattcgaa 314
           ||||||||||||||
Sbjct: 500 ctcaaagattcgaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)