BAC Information

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BAC

Clone NameMSMg01-295O08
Chromosome2 (Build37)
Map Location 47,100,586 - 47,100,893
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295O08.T7 (MSMg01no295_o08.b1)MSMg01-295O08.TJ (MSMg01no295_o08.g1)
ACCAG423655AG423656
length729736
length of high quality
(start - end)		315 (54 - 368)646 (85 - 730)
definitionCHROMAT_FILE: MSMg01no295_o08.b1 PHD_FILE: MSMg01no295_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:57 2005CHROMAT_FILE: MSMg01no295_o08.g1 PHD_FILE: MSMg01no295_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTGCAAAGAAAAAGCAAACAATTTTATTTCTTAAAA
TATACTGGCACCTAAATTATGCATATGTACTAAACTCTCCACTTTGTGGT
GGCAAGTGAATCCCATCAAAAATGTATAGATTTAGAATACATTTTTTAGA
TCATCAGAATGACTGACACTTGTGTTGTAGTGTTTTACATTTTTATATTC
CCCATGGTGAGTTTTAAATATTGCCCTTAAGTAGGGTAGAATTTACACTG
ATTCCAAACTCCTTACACTACAGCCATTCAGTTTCACAATTTCCTTGTAA
TGTTCATAACTGTGATTTTCAGAAATCAAAGTACATATGGGTTGAAGTTT
TCTAGAAAAGTATTATTATTTCTTGGTGATGGAGCTTATGAGCATCTTCC
CTTTCTCAAATACTACCCAATATTAGGACTAAATTGAATGATCTTTTAAA
GCCAGGAGGTACAGGCTTCATCTGCATTCTCTTTCTCTTCTTCACCTGCA
TCTGCTCCTTAAGCTCAGCTATACTCCACTGTTCACCCTCTCGGTCATCC
TATAGAAAAATTACAATGTCTGCATAGTTTCATTTGTTTCAAGGCAAATT
GACTTCTGTTTCTTTTCACCTGTCTTTTTCCTCTAAATGATTTCATGAAA
AAAATTAAAGCCTATTGTAAAAGACTATN

NNNTTAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCACATACCTAAA
CATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATG
GAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGC
CCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGC
AATTCGACAACAAAAGGAGATCAAGGGAATACAAATTGGAAAAGAGGAAG
TCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCC
AAAAATTCCACCAGAGAATTCCTAAACCTGATAAACAGCTTCGGTGAAGT
AGCTGGATATAAAATTAACTCAAACAAGTCACTGGACTTTCTCTATACAA
AGAATAAACAGGCTGAGAAAAAAATTAGGGAAACAACACCCTTCTCAATA
GTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAA
AGATCTGTATGATAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGA
TCTCAGAAGATGGAAGGATCTCCCATGCTCATGGATTGGCAGGATCAACA
TTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATC
CCCATCAAAATTCCAACTCAATTTTTCAACGAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_o08.b1 MSMg01no295_o08.b1 CHROMAT_FILE:
MSMg01no295_o08.b1 PHD_FILE: MSMg01no295_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:57 2005
         (315 letters)



>mm_chr2_47100382_47101096
          Length = 715

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgcaaagaaaaagcaaacaattttatttcttaaaatatactggcacctaaat 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 512 gaattcattgcaaagaaaaagcaaacaattttatttcttaaaaaatactggcacctaaat 453

                                                                       
Query: 65  tatgcatatgtactaaactctccactttgtggtggcaagtgaatcccatcaaaaatgtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatgcatatgtactaaactctccactttgtggtggcaagtgaatcccatcaaaaatgtat 393

                                                                       
Query: 125 agatttagaatacattttttagatcatcagaatgactgacacttgtgttgtagtgtttta 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 392 agatttagaatacattttttagatcatcagaatgactgacacttgtgttgaagtgtttta 333

                                                                       
Query: 185 catttttatattccccatggtgagttttaaatattgcccttaagtagggtagaatttaca 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 catttttatattccccatggtgagttttaaatatcgcccttaagtagggtagaatttaca 273

                                                                       
Query: 245 ctgattccaaactccttacactacagccattcagtttcacaatttccttgtaatgttcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctgattccaaactccttacactacagccattcagtttcacaatttccttgtaatgttcat 213

                   
Query: 305 aactgtga 312
           | ||||||
Sbjct: 212 atctgtga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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