Query= MSMg01no295_o10.b1 MSMg01no295_o10.b1 CHROMAT_FILE:
MSMg01no295_o10.b1 PHD_FILE: MSMg01no295_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:57 2005
(688 letters)
>mm_chr2_44163050_44164136
Length = 1087
Score = 1141 bits (590), Expect = 0.0
Identities = 662/686 (96%), Gaps = 3/686 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttagcaacgggtgtcagctgccctctctggacagctttgtttgaccagaggaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagcaacgggtgtcagctgccctctctggacagctttgtttgaccagaggaa 263
Query: 64 gagaaagcagatgcagtctctttccagtacaatgtctcagtagaggtttgttactaaact 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagaaagtagatgcagtctctttccagtacaatgtctcagtagaggtttgttactaaact 323
Query: 124 ccagaatgaacagcaccggtccttgttttgaaagatggctgcccatctttcacaccttca 183
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 ccagaatgaacagcactggtccttgttttgaaagatggctgcccatcttccacaccttca 383
Query: 184 cctcaattatgttgcagacactgccagccatttctgacaccaggagcgaaacagaagcca 243
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 cctcaattattttgcagacactgccagccatttctgacaccaggagcaaaacagaagcca 443
Query: 244 aagagcggcaatgcaaatggtgccctgggtttgggatccgagctaagtagatgcttagtt 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 aagagcggcaatgcaaatggtgccctgggtttgggatctgagctaagtagatgcttagtt 503
Query: 304 tcccctgtaatgtcgctattcttgacctataaatttagacccttccatgggcagacaagt 363
|||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |
Sbjct: 504 tcccctgtaaggtcgctattcttgagttataaatttagatccttccatgggcagacaaat 563
Query: 364 aagtttcaagcttactttaaagaaagatgtgctatttattatctaccttgcgtagatgag 423
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 564 aagtttcaagcttactttaaagaaagatgtgctatttataatccaccttgcatagatgag 623
Query: 424 aatgtccttctcatgacttagcaaacaaatgacatattggagtaat-tagataattttgc 482
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 624 aatgtccttctcatgacttagcaaacaaatggcatattggagta-tgtagataattttgc 682
Query: 483 atactcaaaaatttccctctaaactcattagatattgctttggtgtttcgttttcttttg 542
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtactcaaaattttccctctaaactcattagatattgctttggtgtttcgttttcttttg 742
Query: 543 ttttgctggatttggtgagaaaagtctaaggaaagtctatgaatttacttatttagtcct 602
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 743 ttttgctggatttggtgagaaaagtcttaggaaagtgtatgaatttacttatttagtcct 802
Query: 603 gttttgagttcagtggtgttgtaagaaaatgctttacactcatcatttaaaagttttacc 662
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 803 gttttgagttcagtagtgttgtaagaaaatgctttacattcatcatttaaaagttttacc 862
Query: 663 aaaaatatttctcaatattcataaat 688
|||| |||||||||||||||||||||
Sbjct: 863 aaaa-tatttctcaatattcataaat 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1087
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1077
Effective search space: 730206
Effective search space used: 730206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_o10.g1 MSMg01no295_o10.g1 CHROMAT_FILE:
MSMg01no295_o10.g1 PHD_FILE: MSMg01no295_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:57 2005
(282 letters)
>mm_chr2_44322902_44323583
Length = 682
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Minus
Query: 1 acacgactagagcccgcgtctttgttctgagtcccactcccttctcagatgggccggaga 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acacaactagagcccgcgtctttgttctgagtcccactcccttctcagatgggccggaga 423
Query: 61 tgtagttaagtgtcctggaagtgtgggcctatcgctcaccacgctctcagcacctccacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgtagttaagtgtcctggaagtgtgggcctatcgctcaccacgctctcagcacctccacg 363
Query: 121 gtgcgcccacactcccataggcgtttattttgtgtctctttcagaattatggttgtttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtgcgcccacactcccataggcgtttattttgtgtctctttcagaattatggttgtttcc 303
Query: 181 ctttccttgaaattaaaccactcaattacatggtatggttggaaatccaaaaatttgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctttccttgaaattaaaccactcaattacatggtatggttggaaatccaaaaatttgaaa 243
Query: 241 agtgccttgctttcacctttatgttctccccgtgttcctttg 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtgccttgctttcacctttatgttctccccgtgttcctttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
