Query= MSMg01no296_l03.b1 MSMg01no296_l03.b1 CHROMAT_FILE:
MSMg01no296_l03.b1 PHD_FILE: MSMg01no296_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:57 2005
(316 letters)
>mm_chr2_138851906_138852621
Length = 716
Score = 456 bits (236), Expect = e-133
Identities = 275/288 (95%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctcatgtaaatgaggaatccccagaaccctagccctgtccaatgatgtacagt 63
|||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||
Sbjct: 614 ggaattcctcatgtaaatgaggcatccccagcaccctagccctgtccagtaatgtacagt 555
Query: 64 cactccatagccctactcacccccaacggttttaaaaaaaactttgttttcccacaataa 123
|||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 554 cactccatagtcctactcacccccaacggtttt-aaaaaacctttgttttcccacaataa 496
Query: 124 attgaaccagatctccgaagttattcccagatgcatgtgtgtgttttctttacccttgca 183
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actgaaccagatctccgaaattattcccagatgcatgtgtgtgttttctttacccttgca 436
Query: 184 ctcactgctaaccaaaacttttgcttgtacccacctgtcccagttaagcttctttcactc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 435 ctcactgctaaccaaaacttttgcttgtacccacctgtcccagttaagcttccttcactc 376
Query: 244 tagtccagtgcagtgcacacctagcctggctagacaaaggtcagcagc 291
||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 375 tagtccagtccagtgcacatctggcctggctagacaaaggtcagcagc 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_l03.g1 MSMg01no296_l03.g1 CHROMAT_FILE:
MSMg01no296_l03.g1 PHD_FILE: MSMg01no296_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:57 2005
(285 letters)
>mm_chr2_138706640_138707324
Length = 685
Score = 474 bits (245), Expect = e-138
Identities = 275/285 (96%)
Strand = Plus / Plus
Query: 1 ttcatctgctgtgaagagagcatatttgatgagcgcaagaaccacacttattttggggta 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttcatctgctgtgaagagagcatatttgatgagtgcaagaaccacacttattttggggta 260
Query: 61 tggagataagtaagtaaaatacagttagttatatactgttagtaaattagcagtcattgg 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cggagataagtaagtaaaatacagttagttatatactgttaggaaattagcagtcattgg 320
Query: 121 gtaaatgacctcactagccgtggttagttagaaaggtttacagtatcaagcataaatgat 180
||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gtatatgacctcactagccatggttagttagaaaggtttacagtctcaagcataaatgat 380
Query: 181 tttctattgataagcccttaagtgtaatcagacagctgttgggtattcttaagacatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctattgataagcccttaagtgtaatcagacagctgttgggtattcttaagacatagg 440
Query: 241 gggctttttcttactattgggaatgtctttctggggcagtcatta 285
|||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcagtatcatactattgggaatgtctttctggggcagtcatta 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
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