BAC Information

Click to search

BAC

Clone NameMSMg01-296N17
Chromosome2 (Build37)
Map Location 5,772,148 - 5,772,459
singlet/doubletsinglet
Overlap geneNudt5
Upstream geneLOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123
Downstream geneSec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296N17.T7 (MSMg01no296_n17.b1)MSMg01-296N17.TJ (MSMg01no296_n17.g1)
ACCAG424350AG424351
length750775
length of high quality
(start - end)
316 (45 - 360)215 (76 - 290)
definitionCHROMAT_FILE: MSMg01no296_n17.b1 PHD_FILE: MSMg01no296_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:09 2005CHROMAT_FILE: MSMg01no296_n17.g1 PHD_FILE: MSMg01no296_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTGACTTGTTACAAATGGAAAGTGAGACAAAGCCTAACCGAGAG
AACATGCTCACTGCGCTCATTCTCTTGATAAGATCTGAGTAATGCCAGCG
GTCTTGCTCAATGCTCATGGTGTTTCAGAAGTAGAACTTTGCCAAGTATG
ATGGACGGCGCATGCCTACAGTCCTAGCGATTTGGGAGGCTGACACTTTG
AGACCAGCGGGGATAATATGGTGTGACTACAGTTCAAAGAAAAAGGAAAA
AAAGACATAGAAGTTTAAACCACCAGCAAAGCCCTGACTGACGGAAAGGC
AGTAGGGACATTTCTATTTTCGACCCACCCCCCCAGGCTCTTTGAAAGAA
ACTGAGTAGGGCCATGCCCCCCCCCTTGTAAGGAATGTATACAAGCCCGT
GTGTGGCTATGGCACACATTCATGCATATGTACAATGTGTGGGGATGCCA
GAAGCCAACCTTGAGTGTTCTCAGAAGCTGCTCTCAGAGACAAGGTCTGT
CACTGGGACCTGGGCTTAACTATTAGCTTAGGCTGACTGCCCATCATATG
CCAGAGAGCCTCCTGCCTCTACCCCCAGCACTGCGTTACAAGTTGGACCA
ACATCCTTGGCTTTTTACTTGGGTGCTGGGGATCAAACTCAGCTGTCTTG
AATGGCAAGCGCTTTCCACTAAACTAGTCCTAGAAAGGTTCCATCCTCAC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGTGAGCCAGGCCTATTGGTACA
TTCCTTTAATCCCATCACTTGGGAGGAAAAGGCAGATAATCTCTGATTTC
AAGGCCACCCTGGTCTATAGAGAGTTCCAGGACAACCAGAGCTCCATAGA
GAAAGAAATTCTGTCCAAAAAACAAAAACAGGAGGAGGGAGAGGAGGAGG
AAGAGAAGGAGGAAGAGGAAGAAGGGAAAACATTGTCATCCTTAGTGAAA
TTAAAAGTCACAAGTGAGCAAAATTTTTTTTCACCACTTTCCTGGATCCT
AAAGGGCCAAATTTAAGATANATGTCAGACCAGNGGCCCCATGTTGTTTA
TGGAAGGGTAAATGGTTTTCCCCCCCCAAAAAAAAAGAAAAAGGGGGGGG
GGGTGGGGGGGCTTCTGTTTACACGTCGTGATGGATTCTTGAGCCTGAGA
GGGATATTTATGCTAAGAGTATTAAGATTTCTTTATCTGACCCTATTACA
CCCTGCTTTATCTAAGCCATGATGTTCCCCGCTGGCCAACTGAATTGGCT
GATTCTCGATGAATCTTGACATCGTTTTTGCATATCCGGTTACATTTCTT
TGTTATTACACTGGCGGATCTCTTTTACTTTACCTGCTCGTTCGCTGTTT
GTGTGTCCTCAGCTCAGATATTAATTAGCCGCATCTGTTCTCTTCCTAAC
CTCCCCCTCTCTTTATATTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_n17.b1 MSMg01no296_n17.b1 CHROMAT_FILE:
MSMg01no296_n17.b1 PHD_FILE: MSMg01no296_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:09 2005
         (316 letters)



>mm_chr2_5771749_5772464
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtgacttgttacaaatggaaagtgagacaaagcctaaccgagagaacatgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcctgtgacttgttacaaatggaaagtgagacaaagcctaaccgagagaacatgct 652

                                                                       
Query: 65  cactgcgctcattctcttgataagatctgagtaatgccagcggtcttgctcaatgctcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cactgcgctcattctcttgataagatctgagtaatgccagcggtcttgctcaatgctcat 592

                                                                       
Query: 125 ggtgtttcagaagtagaactttgccaagtatgatggacggcgcatgcctacagtcctagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggtgtttcagaagtagaactttgccaagtatgatggacggcgcatgcctacagtcctagc 532

                                                                       
Query: 185 gatttgggaggctgacactttgagaccagcggggataatatggtgtgactacagttcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gatttgggaggctgacactttgagaccagcggggataatatggtgtgactacagttcaaa 472

                                                                       
Query: 245 gaaaaaggaaaaaaagacatagaagtttaaaccaccagcaaagccctgactgacggaaag 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 471 gaaaaaggaaaaaaagacatagacgtttaaaccaccagcaaagccctgactgatggaaag 412

                       
Query: 305 gcagtagggaca 316
           ||||||||||||
Sbjct: 411 gcagtagggaca 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)