Query= MSMg01no296_o15.b1 MSMg01no296_o15.b1 CHROMAT_FILE:
MSMg01no296_o15.b1 PHD_FILE: MSMg01no296_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:14 2005
(235 letters)
>mm_chr2_159932053_159932687
Length = 635
Score = 408 bits (211), Expect = e-118
Identities = 232/245 (94%), Gaps = 10/245 (4%)
Strand = Plus / Plus
Query: 1 gggtagacaagatgagcaagcaggggcatgtgtcactccacaaacagagagaagcatgtc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 191 gggtagacaagatgagcaagcaggggcatgcgtcactccacaaacagagagaagcatgtc 250
Query: 61 ccaaagtggtgttgacagtactcagaaaccacgcttaccccgtggaagg----------c 110
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 ccaaagtggtgttgacagtactcagaaaccacgcttaccccgtggaaggtttctgaaggc 310
Query: 111 ctcattatgaaggatcaagagtcagcatcaaacagccaagatagtagcaattgtgaaggc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctcattatgaaggatcaagagtcagcatcaaacagccaagatagtagcaattgtgaaggc 370
Query: 171 atttcacaggacatgtaagcaccaaccacgacagtcccaggaaaagcttggggagttgct 230
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 371 atttcacaggacatgtaagcaccaactacgacagtcccaggaacagcttggggagttgct 430
Query: 231 ggaag 235
|||||
Sbjct: 431 ggaag 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_o15.g1 MSMg01no296_o15.g1 CHROMAT_FILE:
MSMg01no296_o15.g1 PHD_FILE: MSMg01no296_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:14 2005
(676 letters)
>mm_chr2_159931995_159933070
Length = 1076
Score = 1147 bits (593), Expect = 0.0
Identities = 660/691 (95%), Gaps = 16/691 (2%)
Strand = Plus / Plus
Query: 1 aattcttgatcaagtcttccactaagagcagatctttccagtccctaaatacacgagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 192 aattcttgatcaagtcttccactaagagcagatctttccagtccctaaataca-gagtgg 250
Query: 61 gtagacaagatgagcaagcaggggcatgtgtcactccacaaacagagagaagcatgtccc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 251 gtagacaagatgagcaagcaggggcatgcgtcactccacaaacagagagaagcatgtccc 310
Query: 121 aaagtggtgttgacagtactcagaaaccacgcttaccccgtggaagg----------cct 170
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 311 aaagtggtgttgacagtactcagaaaccacgcttaccccgtggaaggtttctgaaggcct 370
Query: 171 cattatgaaggatcaagagtcagcatcaaacagccaagatagtagcaattgtgaaggcat 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cattatgaaggatcaagagtcagcatcaaacagccaagatagtagcaattgtgaaggcat 430
Query: 231 ttcacaggacatgtaagcaccaaccacgacagtcccaggaaaagcttggggagttgctgg 290
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 431 ttcacaggacatgtaagcaccaactacgacagtcccaggaacagcttggggagttgctgg 490
Query: 291 aaggtttcacagaatggagggaggctgggtgtcttggtagcaagcaggatggatgaacat 350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaggtttcacagaatggagagaggctgggtgtcttggtagcaagcaggatggatgaacat 550
Query: 351 caaaacaaagctaggatgatgtcatctcattctgcagaaacactgggtacagtaaggaag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caaaacaaagctaggatgatgtcatctcattctgcagaaacactgggtacagtaaggaag 610
Query: 411 gcgatgggtcaacgatgaactacaaatgaccactggcataaaaggaaaaacgttcagcct 470
|||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||
Sbjct: 611 gcgatgggtcaacgatgaactacaaacgaccactggcataagaggaaaaatgctcagcct 670
Query: 471 ctccactcattacaaaagtctgaattaatgactacaatggggagagaaagcaatagatgc 530
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 671 ctccactcattacagaagtctgaattaatgactacaatggggagaaaaagcaatagatgc 730
Query: 531 tgatgaggatgtgagagaacaggaatcagtatgcacttctacaagggatgcaaacgaaca 590
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 731 tgatgaggatgtgagagaacaggagtcagtatgtacttctacaagggatgcaaacgaaca 790
Query: 591 cagccactatgggaatcactgtgaggcttctcaaaaaaaaat-----taatctgtcatgt 645
||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 791 cagccactatgggaatcaccatgaggcttctcaaaaaaaaaaaaaagtaatctgtcatgt 850
Query: 646 gtccaagctacaccatttctggatatttacc 676
|||||||||||||||||||||||||||||||
Sbjct: 851 gtccaagctacaccatttctggatatttacc 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
