Query= MSMg01no297_d21.b1 MSMg01no297_d21.b1 CHROMAT_FILE:
MSMg01no297_d21.b1 PHD_FILE: MSMg01no297_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:38 2005
(647 letters)
>mm_chr2_164868023_164869070
Length = 1048
Score = 1162 bits (601), Expect = 0.0
Identities = 637/655 (97%), Gaps = 12/655 (1%)
Strand = Plus / Plus
Query: 3 gaattcattctgctttccct--tatggtgcaacattgttaatagtcaggatttgaactca 60
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcattctgct--ccctcttatggtgcaacattgttaatagtcaggatttgaactca 253
Query: 61 tgtcattgagacttcaaagccctcttgttctactgtaccttgtggctttttttttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtcattgagacttcaaagccctcttgttctactgtaccttgtggctttttttttttttt 313
Query: 121 --------aatgggaataccatggaaacgtagcctgggtgagttgatggttggccatgtg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttttttaaatgggaataccatggaaacgtagcctgggtgagttgatggttggccatgtg 373
Query: 173 tatggctgcagcaagtgtggctgtgtcatccctcaggattagatgatatggaaagaaata 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tatggctgcagcaagtgtggctgtgtcatccctcaggattagatgatatggaaagaaata 433
Query: 233 actacttttctcattcctgttgtggagtcacatgcgagcaggtgataaatacacactatc 292
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 434 actacttttctcattcctgttgtggagtcacatgcgagcaggtgagaaatacacactatc 493
Query: 293 ataaggagaactccattagcccccattgtttagacagaagagtcaaaagtaagaagcagg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ataaggagaactccattagcccccattgtttagacagaagagtcaaaagtaagaagcagg 553
Query: 353 agataaaagagctcacaaggaaccacccctctgttgggctcccgctgaaacagaaagaag 412
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 554 agataaaagagctcacaaggaagcagttctctgttgggctcccgctgaaacagaaagaaa 613
Query: 413 cggctctgtttcacaacagttagtgatgagctacacgagatgaaagtcgtcttgtgaccc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cggctctgtttcacaacagttagtgatgagctacacgagatgaaagtcgtcttgtgaccc 673
Query: 473 gtgagtgtaatgagatgaagatgaggtaatgtgatgttttataacgatagaggatctgag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtgagtgtaatgagatgaagatgaggtaatgtgatgttttataacgatagaggatctgag 733
Query: 533 gagctgggaattatctcagcgtgaatgactactaccaggaagctgaacaatgggaccgtc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gagctgggaattatctcagcgtgaatgactactaccaggaagctgaacaatgggaccgtc 793
Query: 593 tggaagcaattctctattcagccgtatttatagcgccattcatcttctctttcag 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tggaagcaattctctattcagccgtatttatagcgccattcatcttctctttcag 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_d21.g1 MSMg01no297_d21.g1 CHROMAT_FILE:
MSMg01no297_d21.g1 PHD_FILE: MSMg01no297_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:38 2005
(542 letters)
>mm_chr2_165028490_165029431
Length = 942
Score = 986 bits (510), Expect = 0.0
Identities = 534/542 (98%)
Strand = Plus / Minus
Query: 1 ttccctaagaggcactatttggacagggtgtccaggggtggggtgcgttgcaatacttca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 915 ttccctaagaggcactatttggacagggtgtccaggggtggggtgcgttggaatacttca 856
Query: 61 gatactgagggagagtgttgaaccagaaggatggacaaggccaaggttctcagatgggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gatactgagggagagtgttgaaccagaaggatggacaaggccaaggttctcagatgggaa 796
Query: 121 caaggttggcaagctggcaggagaggagagaaggggtggggctgtgatcacaaaggtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 caaggttggcaagctggcaggagaggagagaaggggtggggctgtgatcacaaaggtcaa 736
Query: 181 agggcagatcatgtagggccttgtagacattctgtctttagtcctgagaaaggcagggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agggcagatcatgtagggccttgtagacattctgtctttagtcctgagaaaggcagggcc 676
Query: 241 attttcccctgacttctttactgagtataatttacatactataaaattcatcctttgtaa 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 attttcccctgacagctttactgagtataatttacatactataaaattcatcctttgtaa 616
Query: 301 gtgcacacgtaatgatgtccagtaaattactctgcggcacctacaccaccccccatcagg 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 gtgcacacgtaatgatgtccagtaaattactctgcggcacctacaccaccatccatcagg 556
Query: 361 atgtctcttgtaccccttcctgcctgtcacatcagcccacccccattaccagtcccgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgtctcttgtaccccttcctgcctgtcacatcagcccacccccattaccagtcccgagc 496
Query: 421 acaccaatctgcctcctgtctctgtggagatgctgatctggacattcagaaagggaggct 480
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 495 acaccaatctgcctcctgtctctgtggagatgccgatctggacattcagagagggaggct 436
Query: 481 tacgattagcacagcttttcgttcttcaaggagccgagcatcagagatgttggctctcag 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 435 tacgattagcacagcttttcgttcttcagggagccgagcatcagagatgttggctctcag 376
Query: 541 ag 542
||
Sbjct: 375 ag 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
