BAC Information

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BAC

Clone NameMSMg01-298H24
Chromosome2 (Build37)
Map Location 125,771,548 - 125,772,175
singlet/doubletsinglet
Overlap geneGalk2
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2
Downstream geneFgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298H24.T7 (MSMg01no298_h24.b1)MSMg01-298H24.TJ (MSMg01no298_h24.g1)
ACCAG425536AG425537
length743752
length of high quality
(start - end)
595 (66 - 660)628 (76 - 703)
definitionCHROMAT_FILE: MSMg01no298_h24.b1 PHD_FILE: MSMg01no298_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:12 2005CHROMAT_FILE: MSMg01no298_h24.g1 PHD_FILE: MSMg01no298_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTACCGGATCCGCGGAATTCTTTGT
TCAGTTTCGAAAAACATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGATTTCTTCCTATATGTTGGATATTAGTCCCCTATCTGATTT
AAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGAA
TCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GCCTCTATACCAGCACCATGCAGTTTTTATCACAATTGCCCTGTAGTAAA
GCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGC
AGAGTTTTTGCTATCCTACGCTTTTTGTCATTCCAGATGAATG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAGACCTTAGAGAGAGAAGAGCT
TTCATTATTTCTCAGAGTCAGTGGCTTACGGATAATGAAAGAAATGTATT
CTGGGTTAGGACTCCCATGACTGCACCTGATTAGGAAGATTTGGTTTATT
CCAGACCTTCCATCAGATTGTGGGGCTACCTCAGAATATAGGCTGGAAAC
CAAGCTTTTTCTGGAGGGTAAAGGAACATAGAGATGTACTACTACCAGAG
ACCTAATGAAGGGACTTTTCATAGGATCACCAATGAGGTTTTTATTTAAA
AGGTGACACTTAACTCTAAATACTCAGATACTTAAATTCATTATTCACTT
TCAAGACACCTATGATAAAAAGGGAGTATTTTAATAGAGTCAGCACTACA
GAACATATCTCAGGACTAAGGTCAAATGAAGTTTGAATAGATTTCTCCGG
ACTTTATACAGAAGGATGAAGTATAGATAGTCTGAGTAGAGATAAAAGAG
TGAAACTATTCAAGAATAGCCCTTGAGCAGTGGTTTTAAGCCTCCCTAAT
GCTCTGACCTTTTAATATAGTTCCTCATGTTGTGTTGATCCCCCCCAGGC
AGACAATTATTTTTGTTGCTACTTCATAACTATAAGTTTTCTACTGTTAT
AAATATTAATGTGTGTGTTTTCCAATCATCTTAGGTAGCCACTGTNGCAG
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_h24.g1 MSMg01no298_h24.g1 CHROMAT_FILE:
MSMg01no298_h24.g1 PHD_FILE: MSMg01no298_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:12 2005
         (628 letters)



>mm_chr2_125771348_125772375
          Length = 1028

 Score = 1183 bits (612), Expect = 0.0
 Identities = 624/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagaccttagagagagaagagctttcattatttctcagagtcagtggcttacggataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttgagaccttagagagagaagagctttcattatttctcagagtcagtggcttagggataa 260

                                                                       
Query: 61  tgaaagaaatgtattctgggttaggactcccatgactgcacctgattaggaagatttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaagaaatgtattctgggttaggactcccatgactgcacctgattaggaagatttggt 320

                                                                       
Query: 121 ttattccagaccttccatcagattgtggggctacctcagaatataggctggaaaccaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattccagaccttccatcagattgtggggctacctcagaatataggctggaaaccaagc 380

                                                                       
Query: 181 tttttctggagggtaaaggaacatagagatgtactactaccagagacctaatgaagggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttttctggagggtaaaggaacatagagatgtactactaccagagacataatgaagggac 440

                                                                       
Query: 241 ttttcataggatcaccaatgaggtttttatttaaaaggtgacacttaactctaaatactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcataggatcaccaatgaggtttttatttaaaaggtgacacttaactctaaatactc 500

                                                                       
Query: 301 agatacttaaattcattattcactttcaagacacctatgataaaaagggagtattttaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatacttaaattcattattcactttcaagacacctatgataaaaagggagtattttaat 560

                                                                       
Query: 361 agagtcagcactacagaacatatctcaggactaaggtcaaatgaagtttgaatagatttc 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtcagcactacagaacatatcccaggactaaggtcaaatgaagtttgaatagatttc 620

                                                                       
Query: 421 tccggactttatacagaaggatgaagtatagatagtctgagtagagataaaagagtgaaa 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 tccggactttatacagaaggatgaagcatagatagtctgagtagagataaaagagtgaaa 680

                                                                       
Query: 481 ctattcaagaatagcccttgagcagtggttttaagcctccctaatgctctgaccttttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctattcaagaatagcccttgagcagtggttttaagcctccctaatgctctgaccttttaa 740

                                                                       
Query: 541 tatagttcctcatgttgtgttgatcccccccaggcagacaattatttttgttgctacttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatagttcctcatgttgtgttgatcccccccaggcagacaattatttttgttgctacttc 800

                                       
Query: 601 ataactataagttttctactgttataaa 628
           ||||||||||||||||||||||||||||
Sbjct: 801 ataactataagttttctactgttataaa 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)