Query= MSMg01no298_i20.b1 MSMg01no298_i20.b1 CHROMAT_FILE:
MSMg01no298_i20.b1 PHD_FILE: MSMg01no298_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:16 2005
(527 letters)
>mm_chr2_25281240_25282160
Length = 921
Score = 944 bits (488), Expect = 0.0
Identities = 510/520 (98%), Gaps = 6/520 (1%)
Strand = Plus / Plus
Query: 8 tgggtgggagactggtgttgaaaccaaagagctgggcatccaggcttttggtcaccatgg 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgggtgggagactgatgttgaaaccaaagagctgggcatccaggcttttggtcaccatgg 267
Query: 68 cactaccccaaggcttttcctgttcagtgagcaggaattcaggatataaggagaagactg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 268 cactaccccaaggcttttcctgttcagtgagcaggaattcaggatataaggagaaaactg 327
Query: 128 ggctgagacgccctggtgggctttagagtaggggcccaggataagagacaatgaattaat 187
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggctgagatgccctggtgggctttagagtaggggcccaggataagagacaatgaattaat 387
Query: 188 gaggagcatatggggaaggtggctgagggtccctgacttaccttgatcatgcccatggct 247
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 gaggagcatatggggaaggtggctgagggtccctgacttaccttga-----cccatggct 442
Query: 248 gaaggctccatgcccatggctggagctgggaccctacacttctatagtcaaggtgcttag 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaggctccatgcccatggctggagctgggaccctacacttctatagtcaaggtgcttag 502
Query: 308 cctcaaggttgcagatgcatcctctagtactctgggtgcagactgtacactgggcgcagg 367
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctcaaggttgcagatgcaccctctagtactctgggtgcagactgtacactgggcgcagg 562
Query: 368 gggttgtggaaggacagtgcagatgattctgggcttttgacaccacagttcccccaggga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gggttgtggaaggacagtgcagatgattctgggcttttgacaccacagttcccccaggga 622
Query: 428 aagaggcactactaataaaaacactgacagaaatctcctggtcaagtctgttaggcagca 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagaggcactactaataaaaacactgacagaaatctcctggtcaagtctgttaggcagca 682
Query: 488 gagctcaccagcccagcttcctctgctcaattccctccgg 527
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 gagctcaccagcc-agcttcctctgctcaattccctccgg 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 921
Length adjustment: 10
Effective length of query: 517
Effective length of database: 911
Effective search space: 470987
Effective search space used: 470987
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_i20.g1 MSMg01no298_i20.g1 CHROMAT_FILE:
MSMg01no298_i20.g1 PHD_FILE: MSMg01no298_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:16 2005
(526 letters)
>mm_chr2_25439459_25440384
Length = 926
Score = 988 bits (511), Expect = 0.0
Identities = 520/523 (99%)
Strand = Plus / Minus
Query: 1 ttttgggagggggaaaaaaaaccacacaggctaataaaaggttactgcaggcagaatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 556 ttttgggagggggaaaaaaaaccacacaggctaataaaaggttactgcagggagaatacc 497
Query: 61 tgggaatctcgggccggcccaggctgcctggagaagtccttggacttgggccatgtcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgggaatctcgggccggcccaggctgcctggagaagtccttggacttgggccatgtcagc 437
Query: 121 ccagcaaacagcttaggactgtactgtcaggttctcagccccatagggaggggaagaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccagcaaacagcttaggactgtactgtcaggttctcagccccatagggaggggaagaaat 377
Query: 181 tacttgaaggcttgttcaagactcaccaccacaaaaatacataaattgcctgtgggacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tacttgaaggcttgttcaagactcaccaccacaaaaatacataaattgcctgtgggacca 317
Query: 241 cgccctgttgttaatggggtctctgcagcagtgcctctgcctaactctacaaagtggtag 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cgccctgttgggaatggggtctctgcagcagtgcctctgcctaactctacaaagtggtag 257
Query: 301 caggtaggagctcagctgtccttttctgtgcagatagagacagcaaacttccctctaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caggtaggagctcagctgtccttttctgtgcagatagagacagcaaacttccctctaagg 197
Query: 361 agaagaagaaaaagaagaagaaaagcaaagaggtacctactctgtcactaacctcccaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agaagaagaaaaagaagaagaaaagcaaagaggtacctactctgtcactaacctcccaac 137
Query: 421 tagccaagccatccaggctcctagaatgtgggatttagccttgtgggttgcccattgact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tagccaagccatccaggctcctagaatgtgggatttagccttgtgggttgcccattgact 77
Query: 481 ctagttctgctcttcatgaccttcaggaggaagaaaagactac 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ctagttctgctcttcatgaccttcaggaggaagaaaagactac 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
