BAC Information

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BAC

Clone NameMSMg01-298I22
Chromosome2 (Build37)
Map Location 78,009,334 - 78,166,325
singlet/doubletdoublet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298I22.T7 (MSMg01no298_i22.b1)MSMg01-298I22.TJ (MSMg01no298_i22.g1)
ACCAG425579AG425580
length732741
length of high quality
(start - end)		541 (72 - 612)599 (78 - 676)
definitionCHROMAT_FILE: MSMg01no298_i22.b1 PHD_FILE: MSMg01no298_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:16 2005CHROMAT_FILE: MSMg01no298_i22.g1 PHD_FILE: MSMg01no298_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,009,334 - 78,009,873)(78,165,729 - 78,166,325)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGCGGCGCGG
AATTCAGTAACTGTTTTCCATTAATGCATTATCTTTTCCTTATTCAAAAT
CAATTAAATAAAAAAGAAATATTACCTAAAACTTTTGTCTTGCTTCTTGT
TTGGTTAGATAAAGAAGGCATTTGTTGGACATTTCTAGTTGGCTAGTTTC
TTTAGCTCCAACTGGTGTTAAAGAGGTAAGAAGGGTCCAATGATCTCGCT
GCTATGCCATTGTTTGAGATTTGAGGACATTAGCTGGGTAGTCTTCCTTT
GAACTTTCAGAGTCTTGTTAAGGCTTTCTATATATATGTATATTTCCCCA
TGGTGTTCAGTCATACTTAGTGAGGGGGAAGATGGAAAATTGTGTGTATT
TCATGTTCTTGGCAGGAACCGGTGCTCTACTTTCGACAGCAAAAGCATGT
TGCATTACCTAATCTTCATGTGTGCTTAGAGAAATCCATGACAGATGGAC
CACATGCATGGTTACAGTTTCGTCCAACCTGACAATACTGTTTTAGAACA
ATGTCCAGTTTTGGCTGAGGAAGCCATGGTTTGGCCTTCCACTCATGTTT
ATTCATGTGAGTTATGGGTCAGGTTCTATGTTTGGGGCTATAGTATTACA
GAACTGCAAACCACACTTGTCCTTCTACCTTTTCCCAAGTTATTTTGGAT
CAGCCTTTCATTCAAAGTGAGTCTATAAAGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGAAAAATAAAACTTACCAA
GGGTACAGGAATATAGTGGTAAGGAGATGGTAGCATGAATATAATATTTA
ATATTGGCTCTCCTTTTCAAGCTAAGAAACATAATAGAAATATTTGCATA
TAGTTTCATTTGTTGAGATAAACAAAGATATTATGAACCCCAAACCCAGA
AAGTTACATCTCCAAAAGATCATGGCTGTTTCAGAGACTAGGGAGAATAA
AGCAACCTGAGCTTCAAATAATAATGAAGACAGTTGAAATAACACAATAT
CCTAAGGGTTATAAAGATGTATAACCAATAAAAGAACTTGACAATTTACA
GTAGCAGGGGAAATCAAGTATAACAGACCAGAGTGCTGAGGGCTGTTGCC
CAACAAAAGTCAAGATCCATTGTCCATTTCTTTAGACCTGAGCTATTTCC
TAGTCCAACAATGTAATGACTAAAAAGGCTTTTGGGTCCTTAGAAAGGAA
GATCATGCCTACTGTAGCAGGCCTATACAGTACAAACCCTAGTCATTGAC
CAAAGGGAACATGACTACTGACAATGTTAAGTATTTGAATCTGTTTACAA
AAAGGTGATAATAGAGAGACATTTTCAAGACATTGACATACAAGCTTATA
GTTTAGCATCAATATATAGAATTGTATTGTCGATAGCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_i22.b1 MSMg01no298_i22.b1 CHROMAT_FILE:
MSMg01no298_i22.b1 PHD_FILE: MSMg01no298_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:16 2005
         (541 letters)



>mm_chr2_78009133_78010073
          Length = 941

 Score =  967 bits (500), Expect = 0.0
 Identities = 530/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatgcattatcttttccttattcaaaatcaattaaataaaaaagaaatattacctaaaac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatgcattatcttttccttattcaaaatcaattaaataaaaaagaaatattacctaaaac 261

                                                                       
Query: 62  ttttgtcttgcttcttgtttggttagataaagaaggcatttgttggacatttctagttgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 ttttgtcttgcttcttgtttggttagataaagaaggcatttgttggatatttctagttgg 321

                                                                       
Query: 122 ctagtttctttagctccaactggtgttaaagaggtaagaagggtccaatgatctcgctgc 181
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||
Sbjct: 322 ttagtttctttagctccaactggtgttaaagaggtaagaagggtccaatgaacttactgc 381

                                                                       
Query: 182 tatgccattgtttgagatttgaggacattagctgggtagtcttcctttgaactttcagag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatgccattgtttgagatttgaggacattagctgggtagtcttcctttgaactttcagag 441

                                                                       
Query: 242 tcttgttaaggctttctatatatatgtatatttccccatggtgttcagtcatacttagtg 301
           |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 442 tcttgttaaggctttcaatatatatatatatttccccacggtgttcagtcatacttagtg 501

                                                                       
Query: 302 agggggaagatggaaaattgtgtgtatttcatgttcttggcaggaaccggtgctctactt 361
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 502 agggggaagatggaaaattgtgtgtatttcatgttcttggcaggaactggtgctctactt 561

                                                                       
Query: 362 tcgacagcaaaagcatgttgcattacctaatcttcatgtgtgcttagagaaatccatgac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcgacagcaaaagcatgttgcattacctaatcttcatgtgtgcttagagaaatccatgac 621

                                                                       
Query: 422 agatggaccacatgcatggttacagtttcgtccaacctgacaatactgttttagaacaat 481
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agatggaccacatgcattgttacagtttcgtccaacctgacaatactgttttagaacaat 681

                                                                       
Query: 482 gtccagttttggctgaggaagccatggtttggccttccactcatgtttattcatgtgagt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtccagttttggctgaggaagccatggtttggccttccactcatgtttattcatgtgagt 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no298_i22.g1 MSMg01no298_i22.g1 CHROMAT_FILE:
MSMg01no298_i22.g1 PHD_FILE: MSMg01no298_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:16 2005
         (599 letters)



>mm_chr2_78165529_78166527
          Length = 999

 Score = 1147 bits (593), Expect = 0.0
 Identities = 596/597 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggaaaaataaaacttaccaagggtacaggaatatagtggtaaggagatggtagcatg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 797 acaggaaaaataaaacttaccaagggtacaggaatgtagtggtaaggagatggtagcatg 738

                                                                       
Query: 61  aatataatatttaatattggctctccttttcaagctaagaaacataatagaaatatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aatataatatttaatattggctctccttttcaagctaagaaacataatagaaatatttgc 678

                                                                       
Query: 121 atatagtttcatttgttgagataaacaaagatattatgaaccccaaacccagaaagttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atatagtttcatttgttgagataaacaaagatattatgaaccccaaacccagaaagttac 618

                                                                       
Query: 181 atctccaaaagatcatggctgtttcagagactagggagaataaagcaacctgagcttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atctccaaaagatcatggctgtttcagagactagggagaataaagcaacctgagcttcaa 558

                                                                       
Query: 241 ataataatgaagacagttgaaataacacaatatcctaagggttataaagatgtataacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ataataatgaagacagttgaaataacacaatatcctaagggttataaagatgtataacca 498

                                                                       
Query: 301 ataaaagaacttgacaatttacagtagcaggggaaatcaagtataacagaccagagtgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ataaaagaacttgacaatttacagtagcaggggaaatcaagtataacagaccagagtgct 438

                                                                       
Query: 361 gagggctgttgcccaacaaaagtcaagatccattgtccatttctttagacctgagctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagggctgttgcccaacaaaagtcaagatccattgtccatttctttagacctgagctatt 378

                                                                       
Query: 421 tcctagtccaacaatgtaatgactaaaaaggcttttgggtccttagaaaggaagatcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcctagtccaacaatgtaatgactaaaaaggcttttgggtccttagaaaggaagatcatg 318

                                                                       
Query: 481 cctactgtagcaggcctatacagtacaaaccctagtcattgaccaaagggaacatgacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cctactgtagcaggcctatacagtacaaaccctagtcattgaccaaagggaacatgacta 258

                                                                    
Query: 541 ctgacaatgttaagtatttgaatctgtttacaaaaaggtgataatagagagacattt 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgacaatgttaagtatttgaatctgtttacaaaaaggtgataatagagagacattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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