BAC Information

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BAC

Clone NameMSMg01-298N21
Chromosome2 (Build37)
Map Location 75,141,143 - 75,141,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298N21.T7 (MSMg01no298_n21.b1)MSMg01-298N21.TJ (MSMg01no298_n21.g1)
ACCAG425798AG425799
length768732
length of high quality
(start - end)
691 (47 - 737)40 (237 - 276)
definitionCHROMAT_FILE: MSMg01no298_n21.b1 PHD_FILE: MSMg01no298_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:38 2005CHROMAT_FILE: MSMg01no298_n21.g1 PHD_FILE: MSMg01no298_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGAGCGCGG
AATTCTGTGCAGTTGCCGACAAGTGGATAAGTGGAACACATAAAGTGGGG
GTACCAGAGCTGCCCAGGCCCTTTGTTATACCAGCACTAAGACCATGCCC
CTGCTCGCAATGCCTGCTCCCCCAGGATGGCTTTATAAAACCAGTACAGC
ACCAGGCTGGAGTTCAGACATAGTAAGCTTAGCATGGACTATCCCACAGG
CCTGAACAAGGCCACTTTGAGTATCAACATTGGCAGTATCACAGCCATAG
CCTGGGACCTCACCTCCTGAAATGCCCTCAACTTGATGCTAACAGAGACT
TAAATCCACCAGTCCTGATGAATGTGCCTTTCATACGCCCTGCCTCAATC
CCAGCATTGTTACATCTGCCTTGACCAACCTGGCATATATGCAAGGAGGT
TTAAGCTCCTGCGAGGACTGCAAAGGACTGGGAGTTTGAGAGAAATGTAG
GCTGAGAGAGCTGAGGCAGGTCCGTTCCATCTCTGCTGTACTCATCCCAG
CCTAGTTCATTATCCATTGTCTCCGATCTGCCCCTCGAGGAAATAATTTG
GTCTAAATAATCTCACAATAGGGCTCCAGAATAAAGTTTTTAAAAGACTA
GCTGCATTACACCATGTACTCCAATTCAACTGGAGATTAAACAAGAGAGA
AAGGAGACAGAGTCCCCCAGATCCAAGTCTCCTATCTTCAGATATGTTTT
ATGGAGAACTTATGTTAA
GAAAGGTTGNCNACCCNGCNNGAANNANAGCAGGTTGACNGGACGCGCGG
ANCNNNCCAGAACNNNNANCANGAAGGGGAGGNGGACCNGGTCAAACCAN
AANNCNGCANCCAACGAGAAGAACAGGNGGNNNCGGCCCNCGAGCCCGCC
NANACAGCGGACCACACCGAGGGANNCCCGAANACNAAACCAACCCCGCA
NNCCCGGAANAAAACCCACCCGGCCTTTTTTGATGATTGCTTTAATGTGA
TCTTGGATTCGGTTAGCGAGAATTTCATTGAGGACCCTTGCTTTAGTCGT
TTAAGAGAAACCGGGCCGAAGCCCCCCACCCTTGTTGGACCCCCCCGCCC
CCAGGNANCAGAGNAANAGGGGCCCCACAAAAAGAGNCGGGCACAGCACA
CACCACCCCCACCCCGNGAAAAAGCCCCGCGCAGAACNGGAACCAGACCC
CCCCCGAAGGCCCGACAGAACCCCGCACNAAACCCGCCAGGCCCCGGGCC
CCCCCGGGCCGGCACACAACCNACAACCGCCCCCANNACACCAGGGGACA
CGGGACCGCCCAAAAGGCCACACCGACCCCGAACCAACCCCGGCACCCGC
AAACCGCCCAGAAACCAGCCCAAACCGCCCATTTTTTTCTTTTTTGCAGA
CCATAGCCTTTTGTATAAGGATCTGATGCCGCTCCGCATTTCTTCCCGCC
CTGTTGTCCCGTCCCCCCCTCTCGCTCCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_n21.b1 MSMg01no298_n21.b1 CHROMAT_FILE:
MSMg01no298_n21.b1 PHD_FILE: MSMg01no298_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:38 2005
         (691 letters)



>mm_chr2_75140940_75142030
          Length = 1091

 Score = 1292 bits (668), Expect = 0.0
 Identities = 683/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgtgcagttgccgacaagtggataagtggaacacataaagtgggggtaccagag 63
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtgcagctgaagacaagtggataagtggaacacataaagtgggggtaccagag 263

                                                                       
Query: 64  ctgcccaggccctttgttataccagcactaagaccatgcccctgctcgcaatgcctgctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcccaggccctttgttataccagcactaagaccatgcccctgctcgcaatgcctgctc 323

                                                                       
Query: 124 ccccaggatggctttataaaaccagtacagcaccaggctggagttcagacatagtaagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccccaggatggctttataaaaccagtacagcaccaggctggagttcagacatagtaagct 383

                                                                       
Query: 184 tagcatggactatcccacaggcctgaacaaggccactttgagtatcaacattggcagtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagcatggactatcccacaggcctgaacaaggccactttgagtatcaacattggcagtat 443

                                                                       
Query: 244 cacagccatagcctgggacctcacctcctgaaatgccctcaacttgatgctaacagagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacagccatagcctgggacctcacctcctgaaatgccctcaacttgatgctaacagagac 503

                                                                       
Query: 304 ttaaatccaccagtcctgatgaatgtgcctttcatacgccctgcctcaatcccagcattg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaaatccaccagtcctgatgaatgtgcctttcatacgccctgcctcaatcccagcattg 563

                                                                       
Query: 364 ttacatctgccttgaccaacctggcatatatgcaaggaggtttaagctcctgcgaggact 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 ttacatctgccttgaccaacctggcatctatgcaaggaggtttaagctcctgcgaggact 623

                                                                       
Query: 424 gcaaaggactgggagtttgagagaaatgtaggctgagagagctgaggcaggtccgttcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaaaggactgggagtttgagagaaatgtaggctgagagagctgaggcaggtccgttcca 683

                                                                       
Query: 484 tctctgctgtactcatcccagcctagttcattatccattgtctccgatctgcccctcgag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctctgctgtactcatcccagcctagttcattatccattgtctccgatctgcccctcgag 743

                                                                       
Query: 544 gaaataatttggtctaaataatctcacaatagggctccagaataaagtttttaaaagact 603
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 744 gaaataatttggtctaaataatctcagaatagggctccagaataaagtttttaaaagact 803

                                                                       
Query: 604 agctgcattacaccatgtactccaattcaactggagattaaacaagagagaaaggagaca 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agctgcattacaccatgtactccaattcaactggagattaaacaagagagaaaggagaca 863

                                       
Query: 664 gagtcccccagatccaagtctcctatct 691
           ||||||||||||||||||||||||||||
Sbjct: 864 gagtcccccagatccaagtctcctatct 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)