BAC Information

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BAC

Clone NameMSMg01-298O20
Chromosome2 (Build37)
Map Location 156,767,313 - 156,951,288
singlet/doubletdoublet
Overlap geneNdrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1
Upstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880
Downstream geneRbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298O20.T7 (MSMg01no298_o20.b1)MSMg01-298O20.TJ (MSMg01no298_o20.g1)
ACCAG425841AG425842
length722726
length of high quality
(start - end)		553 (46 - 598)500 (72 - 571)
definitionCHROMAT_FILE: MSMg01no298_o20.b1 PHD_FILE: MSMg01no298_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:42 2005CHROMAT_FILE: MSMg01no298_o20.g1 PHD_FILE: MSMg01no298_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(156,950,770 - 156,951,288)(156,767,313 - 156,767,812)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCTTTCTCTGTTCTGTTCCTCTTACCGGTTCCTGACTCTTACCCATTC
TGCTTGGTGTATACAGTAGACCCTGAACAGTAATGGAGCTGTATTATCTT
GGTGGCTGATAACTGACTAGGATGTCATACAGCTGCCACGAGTCATAAAT
GGACCATGTGACTGTGAAAGGAGTCATATCAAGTAATAATAGTAAAATAA
AAATGACCACCAGTTAATACTCAACATTAAAGGAGTTCAGTTTTTGTTTG
TTGTTGTTGTTTTAGTTGTTGTTTGTTATGTGTATAGCCTTCTGCCTGCA
CATTTGCCTCCAAGCCAGAAAAGGAGACCAAATGTCATTATAGATGTTTA
CAAGCCACCATGTGGTTGCTGGGAATTGAACTCAGAACCTCTGGAGGAGC
AGAGCCTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCAAGAAGTAGT
TTTTAAACAACATTCATCAGGGTGCATGAGCTAGCTCAATGGCTTTGTGT
ACTTGCCACCAAGCCTGACATCCTGAGTTCAGTTCGAGGACCCACATGGT
AGGAGTGAGCCAATTCACAGGTTGTCCTCTAGCCACCGCTTATACCTGAC
AGATACACACACTTACCCAGACCCACAGACACTCATACACACCCACCCCA
CATACCCACATTTGCACACCCC

CGATGATGTGGGAGGCCTGGCGGCCGCCTGGGCTCAGTATCGGGGTGAAC
TATAGAAGGTTCCCAGAAATATCCCTCTGAGGACTTGGATGAGGTGGAGC
TGAGGATGCAGGGAAGGAGGTGTGGGAGAGCCTCGGCCATGGGTGACAGG
TTAGGGAAGAAAGATGGCCTGAGGTCACCCATGGGCTGTCAGTGAGCCTC
AGGCTGCAGCGAGAGAGGAGCATGAGTAACGACCCAGCTCACTTCACGGG
CTGCCCGATCCATAATGCTCAGAGACCCACCGTGCTCTATGAATGTCACA
GGCTGCTCCCTGTCTAAGCGTGTTTTTTATGACACCCACATACTAGACAG
ACATTTACATAAGTCAGGCTGGAGGAGGATTCCACAGCCACTGGCAACAG
CGTTACTAGTACTCTCCATCCAAAGCCAGGGGAGGCAATATTCCCCAAAG
GGAAACCCATGTGGGGACAGACAGACAGACAGACTGTTCAGAATCTGGTC
AGCTGGTAGGCAGAAAATATATGCAGGATTTCATTTGCCTGGAATTGGAT
AAGTAGACTAGGCTAGCCTGTCCCTGCCTTGAGCAGTGGGATGCCACCAT
GGCCAGCCCTGGATAGGTTTTTCTTGTTTTTTTAGACAGGCTTTTCTTGG
CTGTCGTGGACCTCACTTTGTAGACCAGGATGGCCTATACCGAGATCCTC
CTGTTTCTGCTTCCCAGAGTGCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_o20.b1 MSMg01no298_o20.b1 CHROMAT_FILE:
MSMg01no298_o20.b1 PHD_FILE: MSMg01no298_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:42 2005
         (553 letters)



>mm_chr2_156950770_156951722
          Length = 953

 Score =  959 bits (496), Expect = 0.0
 Identities = 514/520 (98%), Gaps = 2/520 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctttctctg-ttctgttcctcttaccggttcctgactcttacccattctgcttg 61
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattctttctctgctt-tgttcctcttaccggttcctgactcttacccattctgcttg 461

                                                                       
Query: 62  gtgtatacagtagaccctgaacagtaatggagctgtattatcttggtggctgataactga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 460 gtgtatacagtagaccctgaacagtaatggagctgtattatcttggtggctgataacaga 401

                                                                       
Query: 122 ctaggatgtcatacagctgccacgagtcataaatggaccatgtgactgtgaaaggagtca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctaggatgtcatacagctgccacgagtcataaatggaccatgtgactgtgaaaggagtca 341

                                                                       
Query: 182 tatcaagtaataatagtaaaataaaaatgaccaccagttaatactcaacattaaaggagt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tatcaagtaataatagtaaaataaaaatgaccaccagttaatactcaacattaaaggagt 281

                                                                       
Query: 242 tcagtttttgtttgttgttgttgttttagttgttgtttgttatgtgtatagccttctgcc 301
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 280 acagtttttgtttgttgttgttgttttagttattgtttgttatgtgtatagccttctgcc 221

                                                                       
Query: 302 tgcacatttgcctccaagccagaaaaggagaccaaatgtcattatagatgtttacaagcc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tgcacatttgcctccaagccagaaaaggagaccaaatgtcattatagatgtttacaagcc 161

                                                                       
Query: 362 accatgtggttgctgggaattgaactcagaacctctggaggagcagagcctgctcttaac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 accatgtggttgctgggaattgaactcagaacctctggaggagcagagcctgctcttaac 101

                                                                       
Query: 422 ctctgagccatctctccagcccccaagaagtagtttttaaacaacattcatcagggtgca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ctctgagccatctctccagcccccaagaagtagtttttaaacaacattcatcagggtgca 41

                                                   
Query: 482 tgagctagctcaatggctttgtgtacttgccaccaagcct 521
           ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 40  tgagctagctcaatggctttgggtacttgccaccaagcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no298_o20.g1 MSMg01no298_o20.g1 CHROMAT_FILE:
MSMg01no298_o20.g1 PHD_FILE: MSMg01no298_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:42 2005
         (500 letters)



>mm_chr2_156767113_156768012
          Length = 900

 Score =  843 bits (436), Expect = 0.0
 Identities = 484/504 (96%), Gaps = 8/504 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctctgaggacttggatgaggtggagctgaggatgcagggaaggaggtgtgggagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tccctctgaggacttggatgaggtggagctgaggatgcagggaaggaggtgcgggagagc 260

                                                                       
Query: 61  ctcggccatgggtgacaggttagggaagaaagatggcctgaggtcacccatgggctgtca 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggccatgggtgacaggttagggaagaaagatggcctgaggtcacccatgggctgtca 320

                                                                       
Query: 121 gtgagcctcaggctgcagcgagagaggagcatgagtaacgacccagctcacttcacgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagcctcaggctgcagcgagagaggagcatgagtaacgacccagctcacttcacgggc 380

                                                                       
Query: 181 tgcccgatccataatgctcagagacccaccgtgctctatgaatgtcacaggctgctccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcccgatccataatgctcagagacccaccgtgctctatgaatgtcacaggctgctccct 440

                                                                       
Query: 241 gtctaagcgtg----ttttttatgacacccacatactagacagacatttacataagtcag 296
           |||||||||||    |     | |||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gtctaagcgtgggggtc----aggacatccacatactagacagacatttacataagtcag 496

                                                                       
Query: 297 gctggaggaggattccacagccactggcaacagcgttactagtactctccatccaaagcc 356
           ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 497 gctgggggaggattccacagccactggcaacagcgttgttagtactctccatccaaagcc 556

                                                                       
Query: 357 aggggaggcaatattccccaaagggaaacccatgtggggacagacagacagacagactgt 416
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggggaggcaatattccctaaagggaaacccatgtggggacagacagacagacagactgt 616

                                                                       
Query: 417 tcagaatctggtcagctggtaggcagaaaatatatgcaggatttcatttgcctggaattg 476
           ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 617 tcagaatctggtctgctggtaggcagaaaatatgtgcaagatttcatttgcctggaattg 676

                                   
Query: 477 gataagtagactaggctagcctgt 500
           ||||||||||||||||||||||||
Sbjct: 677 gataagtagactaggctagcctgt 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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