BAC Information

Click to search

BAC

Clone NameMSMg01-298P17
Chromosome2 (Build37)
Map Location 143,906,913 - 143,907,234
singlet/doubletsinglet
Overlap genenone
Upstream geneOtor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298P17.T7 (MSMg01no298_p17.b1)MSMg01-298P17.TJ (MSMg01no298_p17.g1)
ACCAG425881AG425882
length811771
length of high quality
(start - end)
339 (62 - 400)183 (124 - 306)
definitionCHROMAT_FILE: MSMg01no298_p17.b1 PHD_FILE: MSMg01no298_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:46 2005CHROMAT_FILE: MSMg01no298_p17.g1 PHD_FILE: MSMg01no298_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCATGAGGAGGCGCGGAATTCAGCAA
AATTTCGTTATTTGTTTTTTTTCAGTTCTACGTTTCTTCTTGTTGTTAAA
ATAAAAGTAAATGAGTCTCTTAGAAGCAGACTCGGACACTAAATTTGACT
ATCTTGGGTGGAAGAGGAGAGGTATGAGGGTTATTTTTAATTGTCAACTT
GACAGAAGCAAGACTCACTGGGAAATGGGGTGTTGGGAGTGCCTGTAGGG
GATTTTCTTGATTGCGTTCATGGAGATGGAAGACCTGCCCACTGGCTGGG
ATTCTAGACTACTTAAGTGGAGAAAGGGAGCGGATTGCATACATTGCTCT
CTCCTTGACGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGT
GTGAGACCCCCTTCTCCCCCCCTCCCTCTTCTTAATTCCCTTTTTTTTTA
TTTCCACCCCTTTTCCTCATCCCCTCTATTCCCTCTCGTGCCGCGTTTAT
CTCTATTTCTCCNCGCCTCCCCCCCTATCTTCTAATCTAACGCTCCTTCT
ATCCTCCTTCCCCTCTTTTTTTCCTTTTCTCCCTTCTCTATAACCATATC
TCTATTTTCTTTTTTCTCCCCCCCACCTTTCTTTTCCCCTCCTTTCTTTA
TCCTTTCCCCCCTCCTGCATTCCCCCATCCTTTTTTTCTTTATTCCCCCT
TTTTCTCCCTATCCTTTTCCCCCCCGCCTTATTTTTCACCCCCCATTTTC
CGTCCCTTCTTTATTCCTTCATTTTTCACCTTCTATCCTTCTATCTATTC
CCATTCTCTTG
CGATGTAGTGGGAGGCCTGGNGGACGCCTGGGTCCTTACCTGCGGNGAAC
TATAGAAGGTTACAGCACTTCTAGGCTAGACTGGTCTATGTAGTGAGTTC
CAGGACAGCCAGAGCTACACCGTGCGACTGTTGTTTCTAAAACCTTACTA
CCTAGGCAGAGGTTCAACCGTCACCCAGATTCCACACTCTTTCCCTCGTA
TCCTGGTATTTATTTGGGATGGAGTATCTGCAGACGACAGCAACTCTTGT
TTTCTGCCATGACTAGGAAAAACAGTAACAGCAGCAACTTATAAGCGATA
GGAAGTTTTAGCTGTTTCTTCTTTTCAGAGCCCTTATCATATCAGCCACT
GCCTGGTAATCTTTACCACAGTTGATGTTCAGGGTCAACACATCCCTGTA
CAATCTTTGGGAAAACAGGAATAAAATCATGTCGGAGGGGGAGAAGATTA
GCCAGAACATCACTTCAGTGGTTAACGAGGAAATAGAGAAGAGCGTTCAC
GAGCCACATTGGGGCCTGGCACTGGCTGGAGGATTTAGTCACACCCCTGA
CCAGTTTGATTTTCACATTGGCACAGAGGATGTGGCTTTCCTCGGTATGC
CTCTCTTACCTCTTGCCCTGCTCTCACCTTTTTACCTTAAAAAGATGCTC
GCTATCTTTCTCTTTTTTTGTCTCGTTTTTTCGCTTGTTTGCTCTTTTCC
GACATAGGTTTTCCCCCGCGCATTTCCTGCCCGCCCTGTTATCACCCTCC
GTTACACCTGTACTGTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_p17.b1 MSMg01no298_p17.b1 CHROMAT_FILE:
MSMg01no298_p17.b1 PHD_FILE: MSMg01no298_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:46 2005
         (339 letters)



>mm_chr2_143906709_143907447
          Length = 739

 Score =  545 bits (282), Expect = e-159
 Identities = 312/322 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   tttttttcagttctacgtttcttcttgttgttaaaataaaagtaaatgagtctcttagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttttttcagttctacgtttcttcttgttgttaaaataaaagtaaatgagtctcttagaa 264

                                                                       
Query: 65  gcagactcggacactaaatttgactatcttgggtggaagaggagaggtatgagggttatt 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 gcagactcggacactaaatttgactattttgggtggaagaggagaggtatgagggttatt 324

                                                                       
Query: 125 tttaattgtcaacttgacagaagcaagactcactgggaaatggggtgttgggagtgcctg 184
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 325 tttaattgtcaacttgacagaagcgagactcactgggaaatgggctgttgggagtgcctg 384

                                                                       
Query: 185 taggggattttcttgattgcgttcatggagatggaagacctgcccactggctgggattct 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 taggggattttcttgattgcattcatggagatggaagacctgcccactggctgggatcct 444

                                                                       
Query: 245 agactacttaagtggagaaagggagcggattgcatacattgctctctccttgacggggtg 304
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 445 agactacataagtggagaaagggagcagattgcatacattgctctctccttgatggtgtg 504

                                 
Query: 305 tgtgtgtgtgtgtgtgtgtgtg 326
           |||||||||||||||| |||||
Sbjct: 505 tgtgtgtgtgtgtgtgcgtgtg 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)