BAC Information

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BAC

Clone NameMSMg01-299E15
Chromosome2 (Build37)
Map Location 47,818,373 - 47,883,085
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299E15.T7 (MSMg01no299_e15.b1)MSMg01-299E15.TJ (MSMg01no299_e15.g1)
ACCAG426106AG426107
length750741
length of high quality
(start - end)		701 (45 - 745)318 (75 - 392)
definitionCHROMAT_FILE: MSMg01no299_e15.b1 PHD_FILE: MSMg01no299_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:10 2005CHROMAT_FILE: MSMg01no299_e15.g1 PHD_FILE: MSMg01no299_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,882,389 - 47,883,085)(47,818,373 - 47,818,690)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAAACCATCTCCAATAACCCCTCACAATCTGCATGCTTCTTTAAG
AGGCCACAGTAAATAATGAACTTAAAAAGCTTCACCTTGCATGCCTTTTA
GATTCTGACCCTCTGAAGTACATAATAAACCAGATTTGAAGTTCAGCACA
GTAATAACTGTTTATGCAGCCTCCACCTGGGATAGCTCTTGCCTTTTCTG
AAGGAGGGATGTTATTCATTTTCTCCATATAACCATTCTCTTGTCACAAT
TTCTTGTGCTCATACATTGCCAATGAATGTTGCTTAGCATGAAGAAGGAC
ACTAGTGAGGGCTATTTGTCCTTTAACTGCAATCTAAGGTTAAGAAAAAT
TAAGTTTCATGTATGAGAAATCAAAATAGAAGACAAAGCTATTGTGGAAT
GGGATATGTCATTTTGCAGCATCATAAACATTGATTATTTGAGATACACC
TATTTGTAAGAGGGCATGCTTTGCTTCATCATGGTTAGAATAATTAACTG
CATATTTATAATGGAGTGGTTTTAATATGCTTATTGGAAGAAATATCAGC
AAGATATTTCAAGTAATTAAAATGTATTTGGTAAGGAAGCATTCAAAGCT
GGCTCATCATGAGATTTGCCCTTTTATTCAACCCTCTGGGCTATTTATAA
TGAATATAAATTTTGAAAAATGAAGCGAACCTAAATCCCGGCATTGCCAT


NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGAGTCTGACCCAGATTTTTTTAAT
TAACCATGTTTAAGCACAGCAATTTTGGGGAAAAAGTATTCAGCTAACAA
TTAATTCAGACCCACGTGTACAACAGTTTAAGACATATTCACATGGAGAT
TCTTTACAAAGTAAATCTGGCTACTTTCACAACAATGAGTAGTGTTGAGT
TAAAGATAAAGTCCAAAATTTAGAGTCTAGGGATATTGACAGAAGAAAAC
ACAGTGCCTGTGGGTGTCAGAATTGGCCTGGCCATAAGATAGCATAGAAC
TCACTTAGTCTGTTGTGAAGGACAAGTGACATCACTCATAAGAATAGGTT
GTATGATCTAAAAGTAACGCTCGATAGGATCCTTTCAGTCTGCCATCTGC
ACCACTGGAGCTGAGCTGATCCACAGCCTACTGTGCACAGATCCCAACAG
GGAGAGACTGGTCTCCCTAGGAGTGTTTCCTGGGCTCTGATGTGAGATAG
CCACTTTCTCTTCATTACTATCTGGAGAAGGGTGGCAAGGAAGCCACGGG
GACCCAAGAACGAGCAGCAGCTGGGGACAGAATCTTTCGAGCCCCATCTG
GTCCTAAAACCTTGGGTTGGTCCATAATTCTCTGTACACAAATTCTGGGA
AAGAAAGAGCTGGGCTTCCCAGAGTGCGTGAACCAGGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_e15.b1 MSMg01no299_e15.b1 CHROMAT_FILE:
MSMg01no299_e15.b1 PHD_FILE: MSMg01no299_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:10 2005
         (701 letters)



>mm_chr2_47882185_47883285
          Length = 1101

 Score = 1332 bits (689), Expect = 0.0
 Identities = 695/697 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaaaccatctccaataacccctcacaatctgcatgcttctttaagaggccaca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattctgaaaccagctccaataacccctcacaatctgcatgcttctttaagaggccaca 842

                                                                       
Query: 65  gtaaataatgaacttaaaaagcttcaccttgcatgccttttagattctgaccctctgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtaaataatgaacttaaaaagcttcaccttgcatgccttttagattctgaccctctgaag 782

                                                                       
Query: 125 tacataataaaccagatttgaagttcagcacagtaataactgtttatgcagcctccacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacataataaaccagatttgaagttcagcacagtaataactgtttatgcagcctccacct 722

                                                                       
Query: 185 gggatagctcttgccttttctgaaggagggatgttattcattttctccatataaccattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gggatagctcttgccttttctgaaggagggatgttattcattttctccatataaccattc 662

                                                                       
Query: 245 tcttgtcacaatttcttgtgctcatacattgccaatgaatgttgcttagcatgaagaagg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 661 tcttgtcacaatttcttgtgctcatacattgccaatgaatgttgcttagcatgaagaatg 602

                                                                       
Query: 305 acactagtgagggctatttgtcctttaactgcaatctaaggttaagaaaaattaagtttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acactagtgagggctatttgtcctttaactgcaatctaaggttaagaaaaattaagtttc 542

                                                                       
Query: 365 atgtatgagaaatcaaaatagaagacaaagctattgtggaatgggatatgtcattttgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgtatgagaaatcaaaatagaagacaaagctattgtggaatgggatatgtcattttgca 482

                                                                       
Query: 425 gcatcataaacattgattatttgagatacacctatttgtaagagggcatgctttgcttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcatcataaacattgattatttgagatacacctatttgtaagagggcatgctttgcttca 422

                                                                       
Query: 485 tcatggttagaataattaactgcatatttataatggagtggttttaatatgcttattgga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcatggttagaataattaactgcatatttataatggagtggttttaatatgcttattgga 362

                                                                       
Query: 545 agaaatatcagcaagatatttcaagtaattaaaatgtatttggtaaggaagcattcaaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaaatatcagcaagatatttcaagtaattaaaatgtatttggtaaggaagcattcaaag 302

                                                                       
Query: 605 ctggctcatcatgagatttgcccttttattcaaccctctgggctatttataatgaatata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctggctcatcatgagatttgcccttttattcaaccctctgggctatttataatgaatata 242

                                                
Query: 665 aattttgaaaaatgaagcgaacctaaatcccggcatt 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattttgaaaaatgaagcgaacctaaatcccggcatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no299_e15.g1 MSMg01no299_e15.g1 CHROMAT_FILE:
MSMg01no299_e15.g1 PHD_FILE: MSMg01no299_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:11 2005
         (318 letters)



>mm_chr2_47818173_47818890
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagtctgacccagatttttttaattaaccatgtttaagcacagcaattttggggaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagtctgacccagatttttttaattaaccatgtttaagcacagcaattttggggaaaa 260

                                                                       
Query: 61  agtattcagctaacaattaattcagacccacgtgtacaacagtttaagacatattcacat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agtattcagctaacaattaattcagacccaagtgtacaacagtttaagacatattcacat 320

                                                                       
Query: 121 ggagattctttacaaagtaaatctggctactttcacaacaatgagtagtgttgagttaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggagattctttacaaagtaaatctggctactttcacaacaatgagtagtgttgagtcaaa 380

                                                                       
Query: 181 gataaagtccaaaatttagagtctagggatattgacagaagaaaacacagtgcctgtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataaagtccaaaatttagagtctagggatattgacagaagaaaacacagtgcctgtggg 440

                                                                       
Query: 241 tgtcagaattggcctggccataagatagcatagaactcacttagtctgttgtgaaggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcagaattggcctggccataagatagcatagaactcacttagtctgttgtgaaggaca 500

                             
Query: 301 agtgacatcactcataag 318
           ||||||||||||||||||
Sbjct: 501 agtgacatcactcataag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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