BAC Information

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BAC

Clone NameMSMg01-299F19
Chromosome2 (Build37)
Map Location 56,560,239 - 56,560,436
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299F19.T7 (MSMg01no299_f19.b1)MSMg01-299F19.TJ (MSMg01no299_f19.g1)
ACCAG426159AG426160
length751751
length of high quality
(start - end)
321 (42 - 362)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no299_f19.b1 PHD_FILE: MSMg01no299_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:16 2005CHROMAT_FILE: MSMg01no299_f19.g1 PHD_FILE: MSMg01no299_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCTGAAATTTTAAATTCTTGTATTCATCTCTGAGGGTGCCAGTTTAGCG
GGAGTAGTAGACAATTTTCATGTATCTGTGGCCAAGTATCTGACAAGAAG
CAACTTAGAGGAGGAAAGGCTTACTTCATGTTATAGTTGGCGAAGTCAGA
CAGTTTGCACTAAAGGGAGAACTTGACAGTAGGAACATGTGGCTGCCTGC
TCATATTGTGTCCATAATCAAGGAGCAGAGGAAAGTGGATGACATAAACT
GTCTCCCTTTGTCCTTTGTGTCTATTGTGGAACACAACTCCATGGGCGAG
TACCACCTATTTCTTTTGTCGCCCCTTCTCAGTCATTTTTTTCTGACACA
CCCTCACAGACATACACAGATTGTGTTTCCTTGGTGTTTCTAAATCTTGG
ATAGGTGACAATCAAGATTAACCATCAGAGTTGGGAGTTGGTCCTACAAG
CTCCTCACACAGCCACTGTACCAACAGAAGGATTCTAATCTGCTTGCCTT
CAAAGAATGCATTAAAATGCTATGGAAGCTAACTGACGTACCCCTGATTC
TCTCTTACAAAAGAAAGCTTCGGACATACATCTAGGCTATTGTAGATAAC
AGCTATTCCTTTTTATGTGTTTCATGGTATGGCTATATTACAATTAGCCA
GTGTTCTGAATATTTTTGCTTTTTTTTTCCAGTTGGGGCTATTAAATTGC
N
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAAAAGTTCCATTTGATAATGAGATG
AATACTTGTTATTATCAATGAATCAACTCTTTAATAGATTTCTGTTAAAT
CCAGTTGATTCATGGCATAATTTAACTCTGCATTTCTTTTCTGAATTTTA
GTTTGGGTTCAGGAGATGTTTGTAGTTTATTTTTAGCTAAAAAAGCTCTA
GGAGAAAAACTATCTGGATTTCATGGTAGTTGGTGGCTTTACATTGCTGA
GTTAAAGTAGTTGGTGTTTAATGTCGTTAAGAGGGAATTGCTATTTGTTT
TCTCTTCCCTTGTGGTATGACCCCCCCGCCATCATAGGGTTGCTCTTGAT
GTGATGAAAACTCCATGACCAAAAAACACTTGGAAAGAAAAGACTATATT
TGGATTATAACTCCACAACATTGTTCCTCATCAAAGAAAATCAGGATAGG
ATCTGCAGGAACCTGGAGGCAGAAGCTGATGCACAGATCATTGAGGAATA
TCATCTACTAACTTGCTCCACCTGGCTTGCTCAGTTTGTTTTCTTATTCA
CCCTAGGACCACCTGCCCAGAGGCAGCACTCCCCACAAATGGCTGGATCC
TACCTCATCAACCATCAATCAAGAAGATACCCTGCAGACTTCCCTACAGA
TCAATCTTATAAAGGCATTTTGTGAAGAAAGGCCCCTTGGTATTGCAAAC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_f19.g1 MSMg01no299_f19.g1 CHROMAT_FILE:
MSMg01no299_f19.g1 PHD_FILE: MSMg01no299_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:16 2005
         (286 letters)



>mm_chr2_56559951_56560636
          Length = 686

 Score =  352 bits (182), Expect = e-101
 Identities = 194/198 (97%)
 Strand = Plus / Minus

                                                                       
Query: 89  catggcataatttaactctgcatttcttttctgaattttagtttgggttcaggagatgtt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 catggcataatttaactctgcatttcttttctgaattttagtttgggttcaggagatgtt 427

                                                                       
Query: 149 tgtagtttatttttagctaaaaaagctctaggagaaaaactatctggatttcatggtagt 208
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtagtttatttttagctaaacaagatctaggagaaaaactatctggatttcatggtagt 367

                                                                       
Query: 209 tggtggctttacattgctgagttaaagtagttggtgtttaatgtcgttaagagggaattg 268
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 366 tggtggctttacattgctgagttaaagtagttggtgtttaagggcgttaagagggaattg 307

                             
Query: 269 ctatttgttttctcttcc 286
           ||||||||||||||||||
Sbjct: 306 ctatttgttttctcttcc 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)