Query= MSMg01no300_c17.b1 MSMg01no300_c17.b1 CHROMAT_FILE:
MSMg01no300_c17.b1 PHD_FILE: MSMg01no300_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:16 2005
(715 letters)
>mm_chr2_148768622_148769742
Length = 1121
Score = 849 bits (439), Expect = 0.0
Identities = 649/741 (87%), Gaps = 45/741 (6%)
Strand = Plus / Minus
Query: 7 attctat-aaat-agacgcctgaccaagcatagtggtacaaggcagtaaacagaatccct 64
||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 970 attctataaaataaga---ctgaccaagcataccggtacaaggcagtaaacagaatccct 914
Query: 65 caatggccactgctccacaacctgcctcctggttccttctttgtttatgtttcagtaacg 124
|||||||||||| | |||| ||| |||||||||||||||||||||||| ||||||||| |
Sbjct: 913 caatggccactgttacacatcctacctcctggttccttctttgtttatatttcagtaaag 854
Query: 125 aattccttccttgatggactataacacaaaattacaaaacaaataaaccctatcctccac 184
|| |||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||
Sbjct: 853 aaatccttccttggtggactatgacacaaaattacaaaacaaataaactctattctccac 794
Query: 185 aatatggatattgttctgatgcttcatcatagcaataggaactaagaataactaagagaa 244
||||||||| |||||||| ||||||||||||||||| |||| || |||| ||||||
Sbjct: 793 aatatggattttgttctggtgcttcatcatagcaattggaa-----aa-aactgagagaa 740
Query: 245 tatgagtaaactgaacattagccatcatcaaaagatgtacatctggagacaattgatttg 304
||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct: 739 tatgaataaactgaacattagccattatcaaaagatttacatct-gagacaattgatttg 681
Query: 305 aggaaatttcccatatacaggacttgagtacataaataaatgggaagggatttttctttg 364
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 680 aggaaatttcccatatacaagacttgagtacaaaaataaatgaaaagggatttttgtttg 621
Query: 365 tgattatgtacactgatatctcaagtgcaaatttaggattcccagtaaaatatttttttt 424
||||| |||||||||| |||||||||||||||||| ||||||| |||||||| | ||||
Sbjct: 620 tgattgtgtacactgagatctcaagtgcaaatttatgattccctgtaaaataatgttttg 561
Query: 425 caaagtgtggaaggaa--ac-----ttatatgtactgaacatgaagagataagatggaat 477
|||||| |||||| || || |||||| |||||||||||| ||||||||||||||
Sbjct: 560 caaagtatggaagcaaatacatatattatatacactgaacatgaaaagataagatggaat 501
Query: 478 taaaaactcctgaaatattttcagacatcacaactcttggagaataacatg--------- 528
||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 500 taaaaactcctgaaatattttcagatttcacaactcttggagaataatatgtatatatat 441
Query: 529 -----------tatatatacttcatgaaaa-ttc--aatattgttttacttatacccaga 574
||||||||| |||| |||| ||| |||| |||||||||||| ||||
Sbjct: 440 atatatatatatatatatacatcataaaaatttcataata---ttttacttatactcaga 384
Query: 575 tatgatattgtcattcagatactttatgagatttatgtaattttcatctggtgacaacta 634
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatgatattgtcactcagatattttatgagatttatgtaattttcatctggtgacaacta 324
Query: 635 aaacatgtacctgaaggtaataataagacattgctttccttccccaatttctctgtggtt 694
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 atacatgtacctgaaggtaataataagacattgctttccttccccaatttctctgtagtt 264
Query: 695 ttgtcttaactatgaggaaag 715
|||||||||||||||||||||
Sbjct: 263 ttgtcttaactatgaggaaag 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1121
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1111
Effective search space: 783255
Effective search space used: 783255
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no300_c17.g1 MSMg01no300_c17.g1 CHROMAT_FILE:
MSMg01no300_c17.g1 PHD_FILE: MSMg01no300_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:16 2005
(637 letters)
>mm_chr2_148765660_148766695
Length = 1036
Score = 543 bits (281), Expect = e-158
Identities = 344/365 (94%), Gaps = 1/365 (0%)
Strand = Plus / Plus
Query: 273 ctgtatggtctatgttggtcatttctgtttaaagacatccaacaattaatgatattcaaa 332
|||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct: 473 ctgtatggtctatgatggtcatttctgtttaacggcatccaacaattactgatattcaaa 532
Query: 333 atctttttgtcataatttgcacacatatttagctggagcttcagaagaatagaagactca 392
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 533 atctttttgtcataatttgcacacatatttagctggagcttcagaagaatcgaagactca 592
Query: 393 aggtctaagggaagcaagaatggtcattctgtacatatcctgctgggcaaggctaggtcc 452
||||||||||||| |||||||||||||| |||||||| ||| |||||||||| ||| |||
Sbjct: 593 aggtctaagggaaacaagaatggtcattgtgtacatagcctcctgggcaaggttagttcc 652
Query: 453 accttgcaaatatacttttcttttgtgtgttcttacactgtgtcctgatcctgtacacat 512
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 653 accttggaaatatacttttcttttgtgttttcttacactgtgtcctgatcctgtacacat 712
Query: 513 atccctcaatacacaaagaacatttcctctaatgttgttccttagagtattcctgccact 572
|| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 713 attc-tcaatacacaaagaacatttcctctaatgttatgccttagagtattcctgccact 771
Query: 573 ttgtctgattcctcagtttaggctttcttctaaatactaaagccattctttgtaccatgc 632
||||||||||||||||||||||||||||| |||||| ||||||||||||||| | |||||
Sbjct: 772 ttgtctgattcctcagtttaggctttcttgtaaatattaaagccattctttgcaacatgc 831
Query: 633 catgg 637
|||||
Sbjct: 832 catgg 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
