BAC Information

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BAC

Clone NameMSMg01-300H09
Chromosome2 (Build37)
Map Location 84,093,231 - 84,093,518
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300H09.T7 (MSMg01no300_h09.b1)MSMg01-300H09.TJ (MSMg01no300_h09.g1)
ACCAG426943AG426944
length749744
length of high quality
(start - end)
504 (45 - 548)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no300_h09.b1 PHD_FILE: MSMg01no300_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:37 2005CHROMAT_FILE: MSMg01no300_h09.g1 PHD_FILE: MSMg01no300_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTGAGAGGCAGTATGGAGAGTATCTCATATGTTGTGGGGGAGGG
GAAGCTGTGACCAGAATATATTGCATGAAAAACAACCATTTTCAATATGA
AAAGAAATCCGGGCAGTGGTGGGATACACCTTTATCCCAGCACTTGGGAG
GCAGAGGGAGGTAGATTTCTGAGTTTGAGGCCAGCCTTGTCTACAGAGTG
AGTTCCAGGACAGCCAGAGCTATAAAGAGAAACATGAGCCTGATATAGCT
GTCTCCTGAGAGGCTCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTC
ACAACCATCCACTGGATAGAGCATGGAGTCCCCAGTGAAGGAGTTAGAGA
AAGTACCCAAGGATCTGAGGGGGTTTGCAGCCCCATAGGAGGAACAACAA
TATGAACTAACCAGTATCCACAGAGCTCTCTGGGACTTGTGGCTCTAGGT
GCATATGTAGCAGAGGATGGCCTAGTTGGTCATCGATGGGAAGAGAGGTC
CTTGGTCCTTTGAAGGCTCTATGCCCCAGTATAGGGGAATGCCAGGACCA
GTAAGCATGAGTGGCTGGTTTGGTGAGCAGGTTGAGGGCAGAGTTTACAT
TCCTTTCGGCTTATTTTGTTTGCCCCCTTTTTTTCCCCCTTCTTTTCCTA
TTATCGCCGTTAATCCCCCCTTCCTTCCCCCCTTTTTTTCCCCCTCCCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATGATATAATTGTTTCTAGACATGCT
CTCCCAGACATACCCAGATGTCTCTTTGACTAAGCTCCTAGGCATTTCGC
AATAAAACCAAGTAGACACTGAAGATAAACCATTACAAAGAGCTTGGTTC
AATAGCTGGAGTGGTCATGAACACTCTGCTTAGAGTCAATTATTACGTAC
AAATAAGTCACATAAATAACTAAAAAATTATATTTAAAGTATTTGTTCTG
ACTGCTTCTCATAACAAATCAATTCTTGGGAAACCCTTTACTTTTACCTT
CAATGACTGGTTTTATCTTCCACCCCACTACAAAAGATTGACTCCAGTCT
ACACACCCTTTGGACAATCTGAAATGAGCATGTCGAGGAAAAAGATCTTT
GATCTTAGAAACCAATGGAGTTATCTAAGTAATATTAAATTATGCCTTGT
ATTTTAACATATCTTCTTTTATTATTAATTTTATCTACCATCTTAATAAT
AGTTTGAAGGGATGGTCAGGTTTCTGGTAAAGCATTTTTTTCCATGCGTG
TATCTATGGGACAGATTAGTATTTGGAACAGATTAGCATTCTAATCTAGC
CTGAGTGAAAAGCACTCATGTATTTGTATGTGGGTATTATTCAGTTGATT
GACTACTTGAACAGAACCACAAAAAGGTCTATTTTTGTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_h09.g1 MSMg01no300_h09.g1 CHROMAT_FILE:
MSMg01no300_h09.g1 PHD_FILE: MSMg01no300_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:37 2005
         (289 letters)



>mm_chr2_84093031_84093719
          Length = 689

 Score =  495 bits (256), Expect = e-144
 Identities = 280/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgatataattgtttctagacatgctctcccagacatacccagatgtctctttgacta 60
           |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 201 tcatgatataattgtttctagatatgctctcccagacacacccagatgtgtctttgacta 260

                                                                       
Query: 61  agctcctaggcatttcgcaataaaaccaagtagacactgaagataaaccattacaaagag 120
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agctcctagacatttcgcaataaaaccaagtagacattgaagataaaccattacaaagag 320

                                                                       
Query: 121 cttggttcaatagctggagtggtcatgaacactctgcttagagtcaattattacgtacaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 cttggttcaatagctggagtggtcatgaacactctgcttagagtcaattattccgtacaa 380

                                                                       
Query: 181 ataagtcacataaataactaaaaaattatatttaaagtatttgttctgactgcttctcat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ataagtcacataaataactaaaaaattatatttcaagtatttgttctgactgcttctcat 440

                                                           
Query: 241 aacaaatcaattcttgggaaaccctttacttttaccttcaatgactgg 288
           |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aacaaatcaattcttgggaaactctttacttttaccttcaatgactgg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)