BAC Information

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BAC

Clone NameMSMg01-300I19
Chromosome2 (Build37)
Map Location 41,712,454 - 41,712,781
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300I19.T7 (MSMg01no300_i19.b1)MSMg01-300I19.TJ (MSMg01no300_i19.g1)
ACCAG427008AG427009
length756757
length of high quality
(start - end)
474 (38 - 511)547 (117 - 663)
definitionCHROMAT_FILE: MSMg01no300_i19.b1 PHD_FILE: MSMg01no300_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:43 2005CHROMAT_FILE: MSMg01no300_i19.g1 PHD_FILE: MSMg01no300_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTACAGAGTACCCCATTTTTAAATAAGGTTATTTGGTTCTATGGAGTC
TAACTTCTTTGACCTCTTTGTATACATTGGATATTAACCCTCAGTCGGGT
GTGAACTTTGGTAAAGAACTTTTCCCAGTCTGCTGGTTGCCATTTTGTCC
TATTGACAATGTCTTTGCCTTATAGAAGTTTTGCAATTTTATGAGGTCCC
ATTTGTCCATTCTTGATCCTACAGCATAAGCCATTGGTCTTCTGTTCAGG
AAAATATCCCCTGTGCCCATTTGTTTGACATACTTCCCCACTTACTGTTC
TATTAGATTCTGTGTATCTAGTTTTAGGTAGAAGTCCTTGATCCACTTGA
ACTTGAGCTTTTTACAGGGAGATAATAATGGATCAATTTGCATTCTTCTA
CATGTTGACTGACAGTTGAACTACCACCATTTGCTGAAAATGCTGTCTTT
TATCCACTGGGTTGTCTTAGCTCCTTTGTCATAGATAAGTGACTGTAGGT
GTGTGCCTTCATTTCTGGGTCATCAATTCTATTCTATGATCCACCTGCCT
GCCATTTTACCAATACTATTCAGCTTTAACCCCTATAACTCTGCAATACA
CGCGCGACGCCAGGTATGATGATTCCCCCCCATATTCTACCTATCGTTGA
GAACCGTTTCCAATAATATCGCGCCTCTGCTACTCCAGATGAATTTGAAA
ACTGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGAGACTAATTGTGAGTTGTAAGTATGGACAA
AAATAAAATATGAACCTTTCCTATTTCTAAAATAATACAAATAAACAGCT
GGAGGAAATAAGGAAGTTGAAAACCTATGCCAAGTTGCATTCAATAAGGA
GACAGTCCATGTGGTGGCTTGAATGGGAATGTTCCCCTAGTGAACAAGGT
TGGGAAAATTGTGAGATGAGGCCTATTGGAGGAGGTGTGTTGTTGAATGT
GGGCTTTGAGGTTCCAAATGCCTATGCCATTCTCAGCAATCTCTCTGGCT
CATTATTGTGTCTCAAGATGTAAATGCTGAGTTATTGCTCCAGCACCATA
TCTTCCTGCTGCCTTCCATGTTCTTCTCCATAATGGCCACTGATGCTAAC
TGTATGGAAATGTGACACCAAATTAATTTTTTAATTTTTTTATTAATTGC
ATTGGTCGTGATATTTTTCCATTGCAATAGAAAAGACTGTCTGATGGAGA
AAAAATACACTCCAATAATGGGAATGAAAATTCAGTAAGCCAACTCAAAA
ACTCTATAGAACATCTCACTAATAGACTTTAACAAGTGGGGACAGGCAAG
ATTTAAAGACAGGGTAGGAACCAGAGCCATAAGGTAATAAGAAAGAAGAC
ATTTGGAGAGACGGTTCAGAGATAAGTGCAATGGTTGCTCTTGCACAGGA
GTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_i19.g1 MSMg01no300_i19.g1 CHROMAT_FILE:
MSMg01no300_i19.g1 PHD_FILE: MSMg01no300_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:43 2005
         (547 letters)



>mm_chr2_41711835_41712781
          Length = 947

 Score =  582 bits (301), Expect = e-170
 Identities = 322/329 (97%), Gaps = 3/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 221 caatctctctggctcattattgtgtctcaagatgtaaa-tgctgagttattgctccagca 279
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 947 caatctctctggctcattattgtgtctcaagatgtaaact-ctgagttattgctccagca 889

                                                                       
Query: 280 ccatatcttcctgctgccttccatgttcttctccataatggccactgatgctaactgtat 339
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ccatatcttcatgctgccttccatgttcttctccataatggccactgatgctaactgtat 829

                                                                       
Query: 340 ggaaatgtgacaccaaattaa-ttttttaatttttttattaattgcattggtcgtgatat 398
           | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 828 gaaaatgtgacaccaaattaattttttttatttttttattaattgcattggtcgtgatat 769

                                                                       
Query: 399 ttttccattgcaatagaaaagactgtctgatggagaaaaaatacactccaataatgggaa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttttccattgcaatagaaaagactgtctgatggagaaaaaatacactccaataatgggaa 709

                                                                       
Query: 459 tgaaaattcagtaagccaactcaaaaactctatagaacatctcactaatagactttaaca 518
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 708 tgaaaattcagtaagccaactcaaaaactgtatagaacatctcactaatagactttaaca 649

                                        
Query: 519 agtggggacaggcaagatttaaagacagg 547
           |||||||||||||||||||||||||||||
Sbjct: 648 agtggggacaggcaagatttaaagacagg 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)