BAC Information

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BAC

Clone NameMSMg01-300N09
Chromosome2 (Build37)
Map Location 149,226,303 - 149,226,537
singlet/doubletsinglet
Overlap genenone
Upstream geneThbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715
Downstream geneCst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300N09.T7 (MSMg01no300_n09.b1)MSMg01-300N09.TJ (MSMg01no300_n09.g1)
ACCAG427213AG427214
length740743
length of high quality
(start - end)
521 (45 - 565)236 (125 - 360)
definitionCHROMAT_FILE: MSMg01no300_n09.b1 PHD_FILE: MSMg01no300_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:04 2005CHROMAT_FILE: MSMg01no300_n09.g1 PHD_FILE: MSMg01no300_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGAATTCCCTTTAAATAACTAAGACTTTTACCACGGATTTTGTT
CTGTTCTGCTTTTTTCTTTCCCCTCAAAAACTGAAAGTAAGACCCTATTG
ATGAAGACAACACAAATTTCATCTTACCCAGAAGACTCAAACTTTTGACT
CACTACAGTCCTAATAACTGCTAATTCATAGTTCTGTAATTAAAGTTCTT
GCTATCATAGTAGAAAGGTACACACCAACACAGATTAGGCCTTCAGTGAT
AACTTACCTGCATGGTACACTCGTGTAATTGAGACACTGACATCGTATTA
GTAACCAATTACTATGTAGTAGGAATATAGCCCTCTACTTGAGATGAAAA
TAATACCTGACACTTCTTATATAGCCAAGAACATGAGAGTAGATATCCAA
TATTTCTAAAAGAAAAACATATCCTATTATTCTTTTAAAGGACCTTAGCC
ATAAAATTATACCTAATACCACTCTGCTATTCCCAAAGATCAGTGTCTTG
TTCATACATCATCAACAAGTTTTGTCCTGTTGTAGAGGACAACTAATAGA
GAGATCACAACTCTACCATTTACAGAGAGTTAGAATCATTGACAAACTCA
GTCCTAAATGTTATGTCCTGCTAAATTTCCTCACTTCAAGGTTTATGGAA
CTTTCATAGGACAATGCTAAAGATTGTAATAGCCCGACGC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCATTCCAAGCCTTATGATTTAAATGTTCCATT
TGTAAGGGTGTACCTCTATTCCCAGTGATTCTTGGCTGAAAACACTAGAG
ATTCATGGGAAGTGATGAAAATAGCAACATTAACAAGAGTTTGCAGAAAG
ATGACCCCAGCTTCATGGATGCCTTGGAGAGGTCCAACCCTTCAGTGGAA
AAAATCATTGCAGAAGTAAAAGAAACGACAAAATACCTGGAATGATCAAG
AAGCTTAAACTGATTGATATGTGTCTTCATGTGGGCAGCATATGGAGGGC
ATGATGCTGTTGTTTTTATTGCCCCCCCCTCCTTGTTTTGTCAGTGAACA
TACTGGTAATGGTGCTTACCCTTTGGAGACACTATGTTCAGATATATTTT
GGTTTCAGTGGCTCTGCACAGAGGACATGTTTTCATGTCCTTGACAATTG
TTGACATGATTTTCTATCGTATCATTGCATGGCAACTAAGACGCCACTAG
GATCTACAGCTTCCTGGGCCAAGCATATATAGGAAGGACAAGATTCTGTA
ACATATCTAGGAACATATTGTCTATTAGCAATCACATTACCGCTCATAAT
ATTACCCATTCTTAACACACACCAATCCTCCCTGATCACCTTTTGCGCTA
TTCTCAAGTACCTTATTTCATCCTTCTACTTCACCATTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_n09.g1 MSMg01no300_n09.g1 CHROMAT_FILE:
MSMg01no300_n09.g1 PHD_FILE: MSMg01no300_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:04 2005
         (236 letters)



>mm_chr2_149226103_149226738
          Length = 636

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgattcttggctgaaaacactagagattcatgggaagtgatgaaaatagcaacattaac 60
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 435 gtgattcttggctgaaaacactaaagagtcatgggaagtgatgaaaatagcaacattaac 376

                                                                       
Query: 61  aagagtttgcagaaagatgaccccagcttcatggatgccttggagaggtccaacccttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagagtttgcagaaagatgaccccagcttcatggatgccttggagaggtccaacccttca 316

                                                                       
Query: 121 gtggaaaaaatcattgcagaagtaaaagaaacgacaaaatacctggaatgatcaagaagc 180
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 315 ctggaaaaaatcattgcagaagtaaaagaaatgacaaaatacctggaatgatcaagaagc 256

                                                                  
Query: 181 ttaaactgattgatatgtgtcttcatgtgggcagcatatggagggcatgatgctg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttaaactgattgatatgtgtcttcatgtgggcagcatatggagggcatgatgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)